(65 nodes) Histidine kinase domain network (Paenibacillus sp. 32OW)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS26247.1	Histidine kinase. (488 aa)
	ALS25530.1	Chemotaxis protein CheA. (670 aa)
	ALS25600.1	HAMP domain-containing sensor protein. (341 aa)
	ALS25696.1	Signal transduction histidine kinase. (742 aa)
	ALS25835.1	Histidine kinase. (610 aa)
	ALS25882.1	Histidine kinase. (592 aa)
	ALS25914.1	Two-component system sensor histidine kinase. (507 aa)
	ALS25917.1	Two-component system sensor histidine kinase. (465 aa)
	ALS25923.1	Histidine kinase. (759 aa)
	ALS25977.1	Histidine kinase. (599 aa)
	ALS25993.1	HAMP domain-containing sensor protein. (577 aa)
	ALS26078.1	Histidine kinase; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. (388 aa)
	ALS26242.1	Histidine kinase. (582 aa)
	ALS26270.1	Histidine kinase. (607 aa)
	ALS26415.1	Histidine kinase. (588 aa)
	ALS26471.1	Histidine kinase. (637 aa)
	ALS26478.1	Signal transduction histidine kinase. (626 aa)
	ALS26551.1	Helicase Ski2. (596 aa)
	ALS26568.1	Histidine kinase. (591 aa)
	ALS26669.1	PAS domain-containing two-component system sensor histidine kinase. (604 aa)
	ALS26674.1	Two-component system sensor histidine kinase. (476 aa)
	ALS26685.1	Histidine kinase. (568 aa)
	ALS26744.1	Two-component system sensor histidine kinase. (378 aa)
	ALS26766.1	Two-component system sensor histidine kinase. (439 aa)
	ALS26779.1	Histidine kinase. (594 aa)
	ALS26812.1	Histidine kinase. (343 aa)
	ALS26817.1	Two-component system sensor histidine kinase. (499 aa)
	ALS26829.1	Integral membrane sensor signal transduction histidine kinase. (610 aa)
	ALS26889.1	Histidine kinase. (444 aa)
	ALS27061.1	Two-component system sensor histidine kinase. (380 aa)
	ALS27069.1	C50 carotenoid epsilon cyclase. (640 aa)
	ALS27483.1	Histidine kinase. (619 aa)
	ALS27568.1	Chemotaxis protein CheA. (687 aa)
	ALS27639.1	Two-component system sensor histidine kinase. (490 aa)
	ALS27728.1	Histidine kinase. (485 aa)
	ALS27835.1	Two-component system sensor histidine kinase. (490 aa)
	ALS27852.1	Integral membrane sensor signal transduction histidine kinase. (696 aa)
	ALS27862.1	HAMP domain-containing sensor protein. (609 aa)
	ALS27947.1	Histidine kinase. (585 aa)
	ALS27962.1	Two-component system sensor histidine kinase. (451 aa)
	ALS27986.1	Two-component system sensor histidine kinase. (490 aa)
	ALS28067.1	Histidine kinase. (614 aa)
	ALS28295.1	Multi-sensor hybrid histidine kinase. (946 aa)
	ALS28480.1	Histidine kinase. (581 aa)
	ALS28587.1	Histidine kinase. (580 aa)
	ALS28706.1	Histidine kinase. (571 aa)
	ALS28807.1	Two-component system sensor histidine kinase. (439 aa)
	ALS28883.1	Two-component system sensor histidine kinase. (354 aa)
	ALS28891.1	Histidine kinase. (475 aa)
	ALS28901.1	Two-component system sensor histidine kinase. (361 aa)
	ALS29065.1	Two-component system sensor histidine kinase. (448 aa)
	ALS29104.1	PAS domain-containing two-component system sensor histidine kinase. (518 aa)
	ALS29222.1	Histidine kinase. (616 aa)
	ALS29227.1	Histidine kinase. (602 aa)
	ALS29393.1	Histidine kinase. (456 aa)
	ALS29468.1	Chemotaxis protein CheA. (732 aa)
	ALS29579.1	Two-component system sensor histidine kinase. (336 aa)
	ALS29627.1	PAS domain-containing two-component system sensor histidine kinase/response regulator. (560 aa)
	ALS29641.1	C50 carotenoid epsilon cyclase. (934 aa)
	ALS29782.1	Multi-sensor signal transduction histidine kinase. (549 aa)
	ALS29834.1	Two-component system sensor histidine kinase. (477 aa)
	ALS29903.1	Histidine kinase. (596 aa)
	ALS29959.1	Histidine kinase. (582 aa)
	ALS29995.1	Two-component system sensor histidine kinase. (470 aa)
	ALS30131.1	PAS domain-containing two-component system sensor histidine kinase. (598 aa)

Your Current Organism:

Paenibacillus sp. 32OW

NCBI taxonomy Id: 1695218
Other names: P. sp. 32O-W, Paenibacillus sp. 32O-W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS25530.1	ALS28295.1	IJ21_00750	IJ21_28990	Chemotaxis protein CheA.	Multi-sensor hybrid histidine kinase.	0.625
ALS25530.1	ALS29627.1	IJ21_00750	IJ21_42640	Chemotaxis protein CheA.	PAS domain-containing two-component system sensor histidine kinase/response regulator.	0.796
ALS25696.1	ALS25923.1	IJ21_02520	IJ21_04910	Signal transduction histidine kinase.	Histidine kinase.	0.917
ALS25696.1	ALS26669.1	IJ21_02520	IJ21_12650	Signal transduction histidine kinase.	PAS domain-containing two-component system sensor histidine kinase.	0.927
ALS25696.1	ALS28295.1	IJ21_02520	IJ21_28990	Signal transduction histidine kinase.	Multi-sensor hybrid histidine kinase.	0.659
ALS25696.1	ALS28891.1	IJ21_02520	IJ21_35020	Signal transduction histidine kinase.	Histidine kinase.	0.479
ALS25696.1	ALS29393.1	IJ21_02520	IJ21_40070	Signal transduction histidine kinase.	Histidine kinase.	0.410
ALS25696.1	ALS29627.1	IJ21_02520	IJ21_42640	Signal transduction histidine kinase.	PAS domain-containing two-component system sensor histidine kinase/response regulator.	0.502
ALS25835.1	ALS28295.1	IJ21_04030	IJ21_28990	Histidine kinase.	Multi-sensor hybrid histidine kinase.	0.555
ALS25835.1	ALS29627.1	IJ21_04030	IJ21_42640	Histidine kinase.	PAS domain-containing two-component system sensor histidine kinase/response regulator.	0.436
ALS25914.1	ALS25917.1	IJ21_04820	IJ21_04850	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.624
ALS25914.1	ALS28295.1	IJ21_04820	IJ21_28990	Two-component system sensor histidine kinase.	Multi-sensor hybrid histidine kinase.	0.607
ALS25914.1	ALS28891.1	IJ21_04820	IJ21_35020	Two-component system sensor histidine kinase.	Histidine kinase.	0.698
ALS25914.1	ALS29627.1	IJ21_04820	IJ21_42640	Two-component system sensor histidine kinase.	PAS domain-containing two-component system sensor histidine kinase/response regulator.	0.507
ALS25917.1	ALS25914.1	IJ21_04850	IJ21_04820	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase.	0.624
ALS25917.1	ALS26471.1	IJ21_04850	IJ21_10620	Two-component system sensor histidine kinase.	Histidine kinase.	0.540
ALS25917.1	ALS28295.1	IJ21_04850	IJ21_28990	Two-component system sensor histidine kinase.	Multi-sensor hybrid histidine kinase.	0.969
ALS25917.1	ALS29627.1	IJ21_04850	IJ21_42640	Two-component system sensor histidine kinase.	PAS domain-containing two-component system sensor histidine kinase/response regulator.	0.663
ALS25923.1	ALS25696.1	IJ21_04910	IJ21_02520	Histidine kinase.	Signal transduction histidine kinase.	0.917
ALS25923.1	ALS26669.1	IJ21_04910	IJ21_12650	Histidine kinase.	PAS domain-containing two-component system sensor histidine kinase.	0.925