(15 nodes) Periplasmic binding protein network (Paenibacillus sp. 32OW)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS25684.1	Iron ABC transporter substrate-binding protein. (348 aa)
	ALS25688.1	ABC transporter substrate-binding protein. (328 aa)
	ALS25908.1	Putative ABC transporter solute-binding protein. (134 aa)
	ALS26572.1	Periplasmic binding protein. (346 aa)
	ALS26925.1	Fe3+-hydroxamate ABC transporter substrate-binding protein. (425 aa)
	ALS26999.1	ABC transporter substrate-binding protein. (330 aa)
	ALS27668.1	ABC transporter substrate-binding protein. (348 aa)
	ALS29093.1	Iron-uptake system-binding protein. (351 aa)
	ALS29094.1	AraC family transcriptional regulator. (555 aa)
	ALS29112.1	Periplasmic binding protein. (341 aa)
	ALS29114.1	AraC family transcriptional regulator. (610 aa)
	ALS29935.1	ABC transporter substrate-binding protein. (262 aa)
	ALS29937.1	AraC family transcriptional regulator. (403 aa)
	ALS29980.1	ABC transporter substrate-binding protein. (337 aa)
	ALS30146.1	ABC transporter substrate-binding protein. (358 aa)

Your Current Organism:

Paenibacillus sp. 32OW

NCBI taxonomy Id: 1695218
Other names: P. sp. 32O-W, Paenibacillus sp. 32O-W

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS25684.1	ALS25908.1	IJ21_02400	IJ21_04760	Iron ABC transporter substrate-binding protein.	Putative ABC transporter solute-binding protein.	0.624
ALS25684.1	ALS30146.1	IJ21_02400	IJ21_47850	Iron ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.466
ALS25908.1	ALS25684.1	IJ21_04760	IJ21_02400	Putative ABC transporter solute-binding protein.	Iron ABC transporter substrate-binding protein.	0.624
ALS25908.1	ALS26999.1	IJ21_04760	IJ21_15970	Putative ABC transporter solute-binding protein.	ABC transporter substrate-binding protein.	0.486
ALS25908.1	ALS29093.1	IJ21_04760	IJ21_37050	Putative ABC transporter solute-binding protein.	Iron-uptake system-binding protein.	0.719
ALS25908.1	ALS29112.1	IJ21_04760	IJ21_37240	Putative ABC transporter solute-binding protein.	Periplasmic binding protein.	0.437
ALS25908.1	ALS29114.1	IJ21_04760	IJ21_37260	Putative ABC transporter solute-binding protein.	AraC family transcriptional regulator.	0.413
ALS25908.1	ALS29935.1	IJ21_04760	IJ21_45720	Putative ABC transporter solute-binding protein.	ABC transporter substrate-binding protein.	0.564
ALS25908.1	ALS29980.1	IJ21_04760	IJ21_46170	Putative ABC transporter solute-binding protein.	ABC transporter substrate-binding protein.	0.444
ALS25908.1	ALS30146.1	IJ21_04760	IJ21_47850	Putative ABC transporter solute-binding protein.	ABC transporter substrate-binding protein.	0.671
ALS26999.1	ALS25908.1	IJ21_15970	IJ21_04760	ABC transporter substrate-binding protein.	Putative ABC transporter solute-binding protein.	0.486
ALS26999.1	ALS30146.1	IJ21_15970	IJ21_47850	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.420
ALS29093.1	ALS25908.1	IJ21_37050	IJ21_04760	Iron-uptake system-binding protein.	Putative ABC transporter solute-binding protein.	0.719
ALS29093.1	ALS29094.1	IJ21_37050	IJ21_37060	Iron-uptake system-binding protein.	AraC family transcriptional regulator.	0.701
ALS29094.1	ALS29093.1	IJ21_37060	IJ21_37050	AraC family transcriptional regulator.	Iron-uptake system-binding protein.	0.701
ALS29112.1	ALS25908.1	IJ21_37240	IJ21_04760	Periplasmic binding protein.	Putative ABC transporter solute-binding protein.	0.437
ALS29112.1	ALS29114.1	IJ21_37240	IJ21_37260	Periplasmic binding protein.	AraC family transcriptional regulator.	0.616
ALS29114.1	ALS25908.1	IJ21_37260	IJ21_04760	AraC family transcriptional regulator.	Putative ABC transporter solute-binding protein.	0.413
ALS29114.1	ALS29112.1	IJ21_37260	IJ21_37240	AraC family transcriptional regulator.	Periplasmic binding protein.	0.616
ALS29935.1	ALS25908.1	IJ21_45720	IJ21_04760	ABC transporter substrate-binding protein.	Putative ABC transporter solute-binding protein.	0.564