STRINGSTRING
regX3_4 regX3_4 AQS00278.1 AQS00278.1 kdpD_1 kdpD_1 macB_4 macB_4 ytrF_2 ytrF_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
regX3_4Sensory transduction protein regX3. (228 aa)
AQS00278.1Hypothetical protein. (98 aa)
kdpD_1Sensor protein KdpD. (235 aa)
macB_4Macrolide export ATP-binding/permease protein MacB. (229 aa)
ytrF_2ABC transporter permease YtrF precursor. (862 aa)
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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