STRINGSTRING
rob_1 rob_1 eamA_1 eamA_1 AQS00075.1 AQS00075.1 AQS00076.1 AQS00076.1 AQS00117.1 AQS00117.1 rhaS_3 rhaS_3 eamA_2 eamA_2 AQS00213.1 AQS00213.1 AQS00338.1 AQS00338.1 AQS00621.1 AQS00621.1 AQS00988.1 AQS00988.1 AQS01508.1 AQS01508.1 AQS01601.1 AQS01601.1 AQS01626.1 AQS01626.1 AQS01667.1 AQS01667.1 AQS01737.1 AQS01737.1 rob_4 rob_4 AQS01739.1 AQS01739.1 mta_2 mta_2 AQS01741.1 AQS01741.1 AQS01791.1 AQS01791.1 ydeA_3 ydeA_3 lytA_23 lytA_23
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rob_1Right origin-binding protein. (284 aa)
eamA_1Putative amino-acid metabolite efflux pump. (309 aa)
AQS00075.1Hypothetical protein. (155 aa)
AQS00076.1Hypothetical protein. (451 aa)
AQS00117.1Hypothetical protein; TfoX C-terminal domain. (71 aa)
rhaS_3HTH-type transcriptional activator RhaS. (279 aa)
eamA_2Putative amino-acid metabolite efflux pump. (315 aa)
AQS00213.1Hypothetical protein. (141 aa)
AQS00338.1Transcriptional regulator PadR-like family protein. (175 aa)
AQS00621.1Mor transcription activator family protein. (91 aa)
AQS00988.1Hypothetical protein. (140 aa)
AQS01508.1Flavodoxin. (175 aa)
AQS01601.1Transcriptional regulator PadR-like family protein. (175 aa)
AQS01626.1Hypothetical protein. (88 aa)
AQS01667.1Hypothetical protein. (240 aa)
AQS01737.1Hypothetical protein. (205 aa)
rob_4Right origin-binding protein. (290 aa)
AQS01739.1Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase. (369 aa)
mta_2HTH-type transcriptional activator mta. (252 aa)
AQS01741.1Hypothetical protein. (306 aa)
AQS01791.1HTH domain protein. (320 aa)
ydeA_3Putative protease YdeA. (208 aa)
lytA_23Autolysin. (584 aa)
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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