27 items (Oblitimonas alkaliphila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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textmining

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protein homology

Your Input:
	lon	DNA-binding protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (802 aa)
	AKX43837.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
	AKX44147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AKX44172.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1226 aa)
	AKX45792.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)
	AKX44182.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (918 aa)
	AKX44183.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	AKX44186.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1227 aa)
	AKX44193.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	AKX44198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (902 aa)
	AKX44200.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	AKX44201.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	AKX44204.1	EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AKX44205.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	AKX44207.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AKX44208.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AKX44209.1	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AKX44640.1	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	AKX44678.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AKX44854.1	GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. (605 aa)
	AKX45047.1	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (448 aa)
	AKX45277.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	secE	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. (122 aa)
	AKX45409.1	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AKX45918.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
	AKX45668.1	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (121 aa)
	AKX45692.1	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)

Your Current Organism:

Oblitimonas alkaliphila

NCBI taxonomy Id: 1697053
Other names: CCUG 67636, DSM 100830, O. alkaliphila, Oblitimonas alkaliphila Drobish et al. 2016, Pseudomonadaceae bacterium B4199, Pseudomonadaceae bacterium C6819, Pseudomonadaceae bacterium C6918, Pseudomonadaceae bacterium D2441, Pseudomonadaceae bacterium D3318, Pseudomonadaceae bacterium E1086, Pseudomonadaceae bacterium E1148, Pseudomonadaceae bacterium E5571, bacterium B4199, bacterium C6819, bacterium C6918, bacterium D2441, bacterium D3318, bacterium E1086, bacterium E1148, bacterium E5571, strain B4199

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKX43837.1	AKX45792.1	AKN87_00930	AKN87_02940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AKX44172.1	AKX45792.1	AKN87_02935	AKN87_02940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AKX44182.1	AKX44183.1	AKN87_03000	AKN87_03005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AKX44182.1	AKX44186.1	AKN87_03000	AKN87_03020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AKX44182.1	AKX44198.1	AKN87_03000	AKN87_03115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AKX44182.1	AKX44200.1	AKN87_03000	AKN87_03125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
AKX44182.1	AKX44201.1	AKN87_03000	AKN87_03130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
AKX44182.1	AKX44204.1	AKN87_03000	AKN87_03145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
AKX44182.1	AKX44205.1	AKN87_03000	AKN87_03150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
AKX44182.1	AKX44207.1	AKN87_03000	AKN87_03160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AKX44182.1	AKX44208.1	AKN87_03000	AKN87_03165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AKX44182.1	AKX44209.1	AKN87_03000	AKN87_03170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AKX44183.1	AKX44182.1	AKN87_03005	AKN87_03000	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AKX44183.1	AKX44186.1	AKN87_03005	AKN87_03020	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AKX44183.1	AKX44193.1	AKN87_03005	AKN87_03075	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
AKX44183.1	AKX44198.1	AKN87_03005	AKN87_03115	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AKX44183.1	AKX44200.1	AKN87_03005	AKN87_03125	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AKX44183.1	AKX44201.1	AKN87_03005	AKN87_03130	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AKX44183.1	AKX44204.1	AKN87_03005	AKN87_03145	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AKX44183.1	AKX44205.1	AKN87_03005	AKN87_03150	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951

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