STRINGSTRING
AKX45011.1 AKX45011.1 bamE bamE AKX43813.1 AKX43813.1 AKX45749.1 AKX45749.1 AKX45792.1 AKX45792.1 bamA bamA AKX44527.1 AKX44527.1 AKX44610.1 AKX44610.1 bamD bamD AKX45902.1 AKX45902.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AKX45011.1YiuR; outer membrane siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (660 aa)
bamEHypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (193 aa)
AKX43813.1Heme/hemoglobin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
AKX45749.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
AKX45792.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)
bamAHypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (789 aa)
AKX44527.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (627 aa)
AKX44610.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
bamDDNA transporter; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (328 aa)
AKX45902.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (703 aa)
Your Current Organism:
Oblitimonas alkaliphila
NCBI taxonomy Id: 1697053
Other names: CCUG 67636, DSM 100830, O. alkaliphila, Oblitimonas alkaliphila Drobish et al. 2016, Pseudomonadaceae bacterium B4199, Pseudomonadaceae bacterium C6819, Pseudomonadaceae bacterium C6918, Pseudomonadaceae bacterium D2441, Pseudomonadaceae bacterium D3318, Pseudomonadaceae bacterium E1086, Pseudomonadaceae bacterium E1148, Pseudomonadaceae bacterium E5571, bacterium B4199, bacterium C6819, bacterium C6918, bacterium D2441, bacterium D3318, bacterium E1086, bacterium E1148, bacterium E5571, strain B4199
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