(35 nodes) Mixed, incl. SsuA/THI5-like, and Thiamine diphosphate metabolic process network (Paenibacillus stellifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIQ62008.1	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AIQ62126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AIQ62127.1	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AIQ62128.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	AIQ62129.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	AIQ62166.1	FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	AIQ62834.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AIQ62837.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AIQ62838.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AIQ62839.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AIQ63189.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	AIQ63190.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
	AIQ63819.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	AIQ63820.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIQ63821.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AIQ64058.1	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	AIQ64359.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	AIQ64360.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AIQ64552.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AIQ64553.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AIQ64554.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AIQ64555.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIQ65232.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AIQ65233.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIQ65234.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AIQ65612.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	AIQ65613.1	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	AIQ65614.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	AIQ65615.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AIQ65616.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AIQ65617.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AIQ66012.1	Myristoyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	AIQ66013.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	AIQ66014.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AIQ66015.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)

Your Current Organism:

Paenibacillus stellifer

NCBI taxonomy Id: 169760
Other names: CCUG 45566, DSM 14472, P. stellifer, Paenibacillus stellifer Suominen et al. 2003, strain IS 1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIQ62008.1	AIQ62127.1	PSTEL_01595	PSTEL_02305	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AIQ62008.1	AIQ62837.1	PSTEL_01595	PSTEL_06680	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIQ62008.1	AIQ62838.1	PSTEL_01595	PSTEL_06685	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AIQ62008.1	AIQ62839.1	PSTEL_01595	PSTEL_06690	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AIQ62008.1	AIQ63189.1	PSTEL_01595	PSTEL_08865	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AIQ62008.1	AIQ63820.1	PSTEL_01595	PSTEL_12715	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AIQ62008.1	AIQ64360.1	PSTEL_01595	PSTEL_15950	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AIQ62008.1	AIQ64552.1	PSTEL_01595	PSTEL_17060	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
AIQ62008.1	AIQ64553.1	PSTEL_01595	PSTEL_17065	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AIQ62008.1	AIQ64554.1	PSTEL_01595	PSTEL_17070	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AIQ62008.1	AIQ64555.1	PSTEL_01595	PSTEL_17075	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
AIQ62008.1	AIQ65232.1	PSTEL_01595	PSTEL_21035	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AIQ62008.1	AIQ65234.1	PSTEL_01595	PSTEL_21045	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AIQ62008.1	AIQ65612.1	PSTEL_01595	PSTEL_23385	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AIQ62008.1	AIQ65615.1	PSTEL_01595	PSTEL_23405	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AIQ62008.1	AIQ65616.1	PSTEL_01595	PSTEL_23410	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AIQ62008.1	AIQ66013.1	PSTEL_01595	PSTEL_25745	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AIQ62008.1	AIQ66014.1	PSTEL_01595	PSTEL_25750	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AIQ62126.1	AIQ62127.1	PSTEL_02300	PSTEL_02305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AIQ62126.1	AIQ62128.1	PSTEL_02300	PSTEL_02310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763