(10 nodes) Galactose-binding-like domain superfamily network (Paenibacillus stellifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIQ62494.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (970 aa)
	AIQ62043.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (485 aa)
	AIQ62238.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1194 aa)
	AIQ62339.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1271 aa)
	AIQ62682.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (886 aa)
	AIQ63112.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family. (1427 aa)
	AIQ64896.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
	AIQ65210.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	AIQ65643.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1036 aa)
	AIQ65657.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1000 aa)

Your Current Organism:

Paenibacillus stellifer

NCBI taxonomy Id: 169760
Other names: CCUG 45566, DSM 14472, P. stellifer, Paenibacillus stellifer Suominen et al. 2003, strain IS 1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIQ62043.1	AIQ62238.1	PSTEL_01805	PSTEL_03005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AIQ62043.1	AIQ62494.1	PSTEL_01805	PSTEL_04645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	0.491
AIQ62238.1	AIQ62043.1	PSTEL_03005	PSTEL_01805	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.425
AIQ62238.1	AIQ62682.1	PSTEL_03005	PSTEL_05800	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AIQ62339.1	AIQ63112.1	PSTEL_03610	PSTEL_08405	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family.	0.420
AIQ62339.1	AIQ65210.1	PSTEL_03610	PSTEL_20920	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AIQ62494.1	AIQ62043.1	PSTEL_04645	PSTEL_01805	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.491
AIQ62682.1	AIQ62238.1	PSTEL_05800	PSTEL_03005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AIQ63112.1	AIQ62339.1	PSTEL_08405	PSTEL_03610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AIQ63112.1	AIQ65210.1	PSTEL_08405	PSTEL_20920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AIQ64896.1	AIQ65643.1	PSTEL_19055	PSTEL_23565	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AIQ64896.1	AIQ65657.1	PSTEL_19055	PSTEL_23660	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AIQ65210.1	AIQ62339.1	PSTEL_20920	PSTEL_03610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AIQ65210.1	AIQ63112.1	PSTEL_20920	PSTEL_08405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family.	0.507
AIQ65643.1	AIQ64896.1	PSTEL_23565	PSTEL_19055	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AIQ65643.1	AIQ65657.1	PSTEL_23565	PSTEL_23660	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AIQ65657.1	AIQ64896.1	PSTEL_23660	PSTEL_19055	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AIQ65657.1	AIQ65643.1	PSTEL_23660	PSTEL_23565	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913