STRINGSTRING
lmo0441 lmo0441 lmo1438 lmo1438 pbpA pbpA lmo1946 lmo1946 secY secY lmo2229 lmo2229 pbpB pbpB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lmo0441Lmo0441 protein; Similar to penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase). (678 aa)
lmo1438Lmo1438 protein; Similar to penicillin-binding protein. (721 aa)
pbpAPbpA protein; Similar to penicillin-binding protein 2A. (827 aa)
lmo1946Lmo1946 protein; Similar to similar to acyl-CoA hydrolase. (172 aa)
secYProtein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (431 aa)
lmo2229Lmo2229 protein; Similar to penicillin-binding protein. (714 aa)
pbpBPbpB protein; Similar to penicillin-binding protein 2B. (751 aa)
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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