Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ami | lmo0880 | gene:17595269 | gene:17593531 | Autolysin, amidase. | Similar to wall associated protein precursor (LPXTG motif). | 0.422 |
| ami | lmo1521 | gene:17595269 | gene:17594178 | Autolysin, amidase. | Lmo1521 protein; Similar to N-acetylmuramoyl-L-alanine amidase. | 0.486 |
| ami | lysA-2 | gene:17595269 | gene:17594969 | Autolysin, amidase. | L-alanoyl-D-glutamate peptidase. | 0.697 |
| flaA | inlB | gene:17593341 | gene:17593085 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Internalin B; Mediates the entry of L.monocytogenes into normally non- phagocytic mammalian host cells. Its host receptor is hepatocyte growth factor receptor (HGF receptor, a tyrosine kinase, MET) which is tyrosine-phosphorylated in response to InlB. Downstream targets MAPK1/MAPK3 (Erk1/2) and AKT are phosphorylated in response to InlB, which also causes cell colony scattering. Complement component 1 Q subcomponent-binding protein (gC1q-R, C1QBP) has been suggested to also act an InlB receptor, but this is less certain. Stimulation of Tyr-phosphorylation of MET by InlB is potentiated [...] | 0.452 |
| flaA | lmo0514 | gene:17593341 | gene:17593165 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Similar to internalin protein, putative peptidoglycan bound protein (LPXTG motif). | 0.579 |
| flaA | lmo0585 | gene:17593341 | gene:17593236 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Putative secreted protein. | 0.473 |
| flaA | lmo0610 | gene:17593341 | gene:17593260 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Similar to internalin proteins, putative peptidoglycan bound protein (LPXTG motif). | 0.579 |
| flaA | lmo0705 | gene:17593341 | gene:17593356 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Similar to flagellar hook-associated protein FlgK. | 0.995 |
| flaA | lmo1076 | gene:17593341 | gene:17593732 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo1076 protein; Similar to autolysin (EC 3.5.1.28) (N-acetylmuramoyl-L-alanine amidase). | 0.452 |
| flaA | lmo1215 | gene:17593341 | gene:17593871 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo1215 protein; Similar to N-acetylmuramoyl-L-alanine amidase (autolysin). | 0.480 |
| flaA | lmo1216 | gene:17593341 | gene:17593872 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo1216 protein; Similar to N-acetylmuramoyl-L-alanine amidase (autolysin). | 0.509 |
| flaA | lmo1290 | gene:17593341 | gene:17593947 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Similar to internalin proteins, putative peptidoglycan bound protein (LPXTG motif). | 0.473 |
| flaA | lmo2203 | gene:17593341 | gene:17594894 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo2203 protein; Similar to N-acetylmuramoyl-L-alanine amidase and to internalin B. | 0.491 |
| flaA | lmo2591 | gene:17593341 | gene:17595309 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Surface protein (GW repeat) similar to N-acetylmuramidase. | 0.506 |
| flaA | lmo2691 | gene:17593341 | gene:17595408 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo2691 protein; Similar to autolysin, N-acetylmuramidase. | 0.405 |
| flaA | plcA | gene:17593341 | gene:17592837 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Phosphatidylinositol-specific phospholipase c; Cleaves glycosylphosphatidylinositol (GPI) and phosphatidylinositol (PI) anchors but not PI phosphates. Important factor in pathogenesis, PI-PLC activity is present only in virulent listeria species. It may participate in the lysis of the phagolysosomal membrane. | 0.620 |
| flaA | plcB | gene:17593341 | gene:17592841 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Phospholipase C; Important role in the infectious process. May contribute to efficient lysis of the two-membrane vacuoles that surround the bacteria after direct cell-to-cell spread. | 0.412 |
| inlB | flaA | gene:17593085 | gene:17593341 | Internalin B; Mediates the entry of L.monocytogenes into normally non- phagocytic mammalian host cells. Its host receptor is hepatocyte growth factor receptor (HGF receptor, a tyrosine kinase, MET) which is tyrosine-phosphorylated in response to InlB. Downstream targets MAPK1/MAPK3 (Erk1/2) and AKT are phosphorylated in response to InlB, which also causes cell colony scattering. Complement component 1 Q subcomponent-binding protein (gC1q-R, C1QBP) has been suggested to also act an InlB receptor, but this is less certain. Stimulation of Tyr-phosphorylation of MET by InlB is potentiated [...] | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.452 |
| inlB | lmo0327 | gene:17593085 | gene:17592978 | Internalin B; Mediates the entry of L.monocytogenes into normally non- phagocytic mammalian host cells. Its host receptor is hepatocyte growth factor receptor (HGF receptor, a tyrosine kinase, MET) which is tyrosine-phosphorylated in response to InlB. Downstream targets MAPK1/MAPK3 (Erk1/2) and AKT are phosphorylated in response to InlB, which also causes cell colony scattering. Complement component 1 Q subcomponent-binding protein (gC1q-R, C1QBP) has been suggested to also act an InlB receptor, but this is less certain. Stimulation of Tyr-phosphorylation of MET by InlB is potentiated [...] | Lmo0327 protein; Similar to cell surface proteins (LPXTG motif). | 0.456 |
| inlB | lmo0435 | gene:17593085 | gene:17593086 | Internalin B; Mediates the entry of L.monocytogenes into normally non- phagocytic mammalian host cells. Its host receptor is hepatocyte growth factor receptor (HGF receptor, a tyrosine kinase, MET) which is tyrosine-phosphorylated in response to InlB. Downstream targets MAPK1/MAPK3 (Erk1/2) and AKT are phosphorylated in response to InlB, which also causes cell colony scattering. Complement component 1 Q subcomponent-binding protein (gC1q-R, C1QBP) has been suggested to also act an InlB receptor, but this is less certain. Stimulation of Tyr-phosphorylation of MET by InlB is potentiated [...] | Putative peptidoglycan bound protein (LPXTG motif). | 0.474 |
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