Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PdhB | pdhA | gene:17593709 | gene:17593708 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). | 0.999 |
| PdhB | tufA | gene:17593709 | gene:17595370 | PdhB protein; Highly similar to pyruvate dehydrogenase (E1 beta subunit). | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.453 |
| comEC | comFA | gene:17594139 | gene:17595224 | ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding. | ComFA protein; Similar to late competence protein comFA. | 0.867 |
| comEC | comFC | gene:17594139 | gene:17595223 | ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding. | ComFC protein; Similar to late competence protein comFC. | 0.857 |
| comEC | pdhA | gene:17594139 | gene:17593708 | ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding. | Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). | 0.550 |
| comFA | comEC | gene:17595224 | gene:17594139 | ComFA protein; Similar to late competence protein comFA. | ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding. | 0.867 |
| comFA | comFC | gene:17595224 | gene:17595223 | ComFA protein; Similar to late competence protein comFA. | ComFC protein; Similar to late competence protein comFC. | 0.970 |
| comFC | comEC | gene:17595223 | gene:17594139 | ComFC protein; Similar to late competence protein comFC. | ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding. | 0.857 |
| comFC | comFA | gene:17595223 | gene:17595224 | ComFC protein; Similar to late competence protein comFC. | ComFA protein; Similar to late competence protein comFA. | 0.970 |
| cspB | rplL | gene:17594701 | gene:17592902 | Similar to major cold-shock protein. | Ribosomal protein L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.452 |
| cspB | rpsB | gene:17594701 | gene:17594315 | Similar to major cold-shock protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.565 |
| cspB | rpsC | gene:17594701 | gene:17595344 | Similar to major cold-shock protein. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.516 |
| cspB | rpsF | gene:17594701 | gene:17592679 | Similar to major cold-shock protein. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.511 |
| cspB | rpsJ | gene:17594701 | gene:17595351 | Similar to major cold-shock protein. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.518 |
| cspB | rpsR | gene:17594701 | gene:17592681 | Similar to major cold-shock protein. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.482 |
| dnaN | rpsB | gene:17592637 | gene:17594315 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.446 |
| fus | rplA | gene:17595371 | gene:17592900 | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.999 |
| fus | rplL | gene:17595371 | gene:17592902 | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Ribosomal protein L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
| fus | rpsB | gene:17595371 | gene:17594315 | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| fus | rpsC | gene:17595371 | gene:17595344 | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
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