(7 nodes) Mixed, incl. Alanine racemase activity, and FemABX peptidyl transferase network (Streptomyces sp. TSRI0107)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OKJ87794.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	OKJ88184.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	OKJ83737.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	OKJ83738.1	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1198 aa)
	whiB-5	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (87 aa)
	OKJ71991.1	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	OKJ71992.1	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)

Your Current Organism:

Streptomyces sp. TSRI0107

NCBI taxonomy Id: 1703942
Other names: S. sp. TSRI0107

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OKJ71991.1	OKJ71992.1	AMK31_34130	AMK31_34135	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OKJ71991.1	OKJ83737.1	AMK31_34130	AMK31_16365	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
OKJ71991.1	OKJ83738.1	AMK31_34130	AMK31_16370	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
OKJ71991.1	OKJ87794.1	AMK31_34130	AMK31_11625	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
OKJ71991.1	OKJ88184.1	AMK31_34130	AMK31_11860	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
OKJ71992.1	OKJ71991.1	AMK31_34135	AMK31_34130	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OKJ71992.1	OKJ83737.1	AMK31_34135	AMK31_16365	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
OKJ71992.1	OKJ83738.1	AMK31_34135	AMK31_16370	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
OKJ71992.1	OKJ87794.1	AMK31_34135	AMK31_11625	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
OKJ83737.1	OKJ71991.1	AMK31_16365	AMK31_34130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
OKJ83737.1	OKJ71992.1	AMK31_16365	AMK31_34135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
OKJ83737.1	OKJ83738.1	AMK31_16365	AMK31_16370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
OKJ83737.1	OKJ87794.1	AMK31_16365	AMK31_11625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
OKJ83737.1	OKJ88184.1	AMK31_16365	AMK31_11860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OKJ83737.1	whiB-5	AMK31_16365	AMK31_16375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.728
OKJ83738.1	OKJ71991.1	AMK31_16370	AMK31_34130	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
OKJ83738.1	OKJ71992.1	AMK31_16370	AMK31_34135	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
OKJ83738.1	OKJ83737.1	AMK31_16370	AMK31_16365	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
OKJ83738.1	whiB-5	AMK31_16370	AMK31_16375	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.766
OKJ87794.1	OKJ71991.1	AMK31_11625	AMK31_34130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769