(12 nodes) RpiR-like, SIS domain, and ABC transporters network (Arthrobacter sp. ERGS101)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALE04933.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)
	ALE04935.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	ALE04999.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (653 aa)
	ALE07624.1	Sugar ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	ALE05232.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ALE05233.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	ALE07625.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	ALE07452.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	ALE07453.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	ALE07454.1	Sugar ABC transporter sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	ALE07455.1	Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	ALE07456.1	RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)

Your Current Organism:

Arthrobacter sp. ERGS101

NCBI taxonomy Id: 1704044
Other names: A. sp. ERGS1:01, Arthrobacter sp. ERGS1:01

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALE04933.1	ALE04935.1	AL755_04595	AL755_04605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ALE04933.1	ALE04999.1	AL755_04595	AL755_05015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
ALE04933.1	ALE05233.1	AL755_04595	AL755_06665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
ALE04933.1	ALE07454.1	AL755_04595	AL755_21495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
ALE04933.1	ALE07625.1	AL755_04595	AL755_06675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
ALE04935.1	ALE04933.1	AL755_04605	AL755_04595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ALE04935.1	ALE04999.1	AL755_04605	AL755_05015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
ALE04935.1	ALE07625.1	AL755_04605	AL755_06675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
ALE04999.1	ALE04933.1	AL755_05015	AL755_04595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
ALE04999.1	ALE04935.1	AL755_05015	AL755_04605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
ALE04999.1	ALE05233.1	AL755_05015	AL755_06665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
ALE04999.1	ALE07453.1	AL755_05015	AL755_21490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
ALE04999.1	ALE07454.1	AL755_05015	AL755_21495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
ALE05232.1	ALE05233.1	AL755_06660	AL755_06665	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
ALE05232.1	ALE07453.1	AL755_06660	AL755_21490	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
ALE05232.1	ALE07454.1	AL755_06660	AL755_21495	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
ALE05232.1	ALE07624.1	AL755_06660	AL755_06655	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
ALE05232.1	ALE07625.1	AL755_06660	AL755_06675	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
ALE05233.1	ALE04933.1	AL755_06665	AL755_04595	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
ALE05233.1	ALE04999.1	AL755_06665	AL755_05015	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489