(4 nodes) RpiR-like, SIS domain network (Arthrobacter sp. ERGS101)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALE07456.1	RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	ALE05044.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	ALE07881.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	ALE07455.1	Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)

Your Current Organism:

Arthrobacter sp. ERGS101

NCBI taxonomy Id: 1704044
Other names: A. sp. ERGS1:01, Arthrobacter sp. ERGS1:01

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALE05044.1	ALE07455.1	AL755_05355	AL755_21500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
ALE07455.1	ALE05044.1	AL755_21500	AL755_05355	Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
ALE07455.1	ALE07456.1	AL755_21500	AL755_21505	Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
ALE07456.1	ALE07455.1	AL755_21505	AL755_21500	RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935