(12 nodes) Chaperonin-containing T-complex network (Neophocaena asiaeorientalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MKKS	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (570 aa)
	CCT2	T-complex protein 1 subunit beta. (535 aa)
	CCT8L2	LOW QUALITY PROTEIN: T-complex protein 1 subunit theta-like 2; Belongs to the TCP-1 chaperonin family. (530 aa)
	CCT6A	T-complex protein 1 subunit zeta. (531 aa)
	ERMARD	Endoplasmic reticulum membrane-associated RNA degradation protein isoform X1. (728 aa)
	TCP1	T-complex protein 1 subunit alpha. (556 aa)
	CCT3	T-complex protein 1 subunit gamma. (545 aa)
	CCT8	T-complex protein 1 subunit theta. (548 aa)
	CCT4	T-complex protein 1 subunit delta. (539 aa)
	CCT7	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (543 aa)
	CCT5	T-complex protein 1 subunit epsilon. (541 aa)
	CCT6B	T-complex protein 1 subunit zeta-2. (245 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCT2	CCT3	A0A341AS21	A0A341BQR8	T-complex protein 1 subunit beta.	T-complex protein 1 subunit gamma.	0.999
CCT2	CCT4	A0A341AS21	A0A341C2S1	T-complex protein 1 subunit beta.	T-complex protein 1 subunit delta.	0.999
CCT2	CCT5	A0A341AS21	A0A341D7I3	T-complex protein 1 subunit beta.	T-complex protein 1 subunit epsilon.	0.999
CCT2	CCT6A	A0A341AS21	A0A341BED2	T-complex protein 1 subunit beta.	T-complex protein 1 subunit zeta.	0.999
CCT2	CCT6B	A0A341AS21	A0A341DDF7	T-complex protein 1 subunit beta.	T-complex protein 1 subunit zeta-2.	0.999
CCT2	CCT7	A0A341AS21	A0A341D150	T-complex protein 1 subunit beta.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
CCT2	CCT8	A0A341AS21	A0A341C1E9	T-complex protein 1 subunit beta.	T-complex protein 1 subunit theta.	0.999
CCT2	CCT8L2	A0A341AS21	A0A341AZI5	T-complex protein 1 subunit beta.	LOW QUALITY PROTEIN: T-complex protein 1 subunit theta-like 2; Belongs to the TCP-1 chaperonin family.	0.998
CCT2	ERMARD	A0A341AS21	A0A341BFZ7	T-complex protein 1 subunit beta.	Endoplasmic reticulum membrane-associated RNA degradation protein isoform X1.	0.995
CCT2	MKKS	A0A341AS21	A0A341APW9	T-complex protein 1 subunit beta.	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	0.992
CCT2	TCP1	A0A341AS21	A0A341BPT8	T-complex protein 1 subunit beta.	T-complex protein 1 subunit alpha.	0.999
CCT3	CCT2	A0A341BQR8	A0A341AS21	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit beta.	0.999
CCT3	CCT4	A0A341BQR8	A0A341C2S1	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit delta.	0.999
CCT3	CCT5	A0A341BQR8	A0A341D7I3	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit epsilon.	0.999
CCT3	CCT6A	A0A341BQR8	A0A341BED2	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit zeta.	0.999
CCT3	CCT6B	A0A341BQR8	A0A341DDF7	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit zeta-2.	0.999
CCT3	CCT7	A0A341BQR8	A0A341D150	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
CCT3	CCT8	A0A341BQR8	A0A341C1E9	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit theta.	0.999
CCT3	CCT8L2	A0A341BQR8	A0A341AZI5	T-complex protein 1 subunit gamma.	LOW QUALITY PROTEIN: T-complex protein 1 subunit theta-like 2; Belongs to the TCP-1 chaperonin family.	0.992
CCT3	MKKS	A0A341BQR8	A0A341APW9	T-complex protein 1 subunit gamma.	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	0.970