(37 nodes) Organellar large ribosomal subunit network (Neophocaena asiaeorientalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MRPL39	39S ribosomal protein L39, mitochondrial isoform X1. (364 aa)
	MRPL46	39S ribosomal protein L46, mitochondrial isoform X1. (280 aa)
	MRPL51	39S ribosomal protein L51, mitochondrial. (138 aa)
	MRPL3	39S ribosomal protein L3, mitochondrial; Belongs to the universal ribosomal protein uL3 family. (348 aa)
	MRPL50	39S ribosomal protein L50, mitochondrial isoform X1. (169 aa)
	MRPL43	LOW QUALITY PROTEIN: 39S ribosomal protein L43, mitochondrial. (154 aa)
	MRPL54	39S ribosomal protein L54, mitochondrial. (135 aa)
	MRPL13	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family. (197 aa)
	MRPL15	39S ribosomal protein L15, mitochondrial. (296 aa)
	MRPL52	39S ribosomal protein L52, mitochondrial isoform X1. (160 aa)
	MRPL35	39S ribosomal protein L35, mitochondrial. (188 aa)
	MRPL10	39S ribosomal protein L10, mitochondrial isoform X1. (338 aa)
	MRPL45	LOW QUALITY PROTEIN: 39S ribosomal protein L45, mitochondrial. (308 aa)
	MRPL4	39S ribosomal protein L4, mitochondrial isoform X1. (294 aa)
	MRPL24	39S ribosomal protein L24, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL24 family. (216 aa)
	MRPL18	39S ribosomal protein L18, mitochondrial isoform X1. (180 aa)
	MRPL49	39S ribosomal protein L49, mitochondrial. (166 aa)
	MRPL11	39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family. (192 aa)
	MRPL16	39S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family. (251 aa)
	MRPL57	Ribosomal protein 63, mitochondrial. (102 aa)
	MTIF2	Translation initiation factor IF-2, mitochondrial isoform X1. (757 aa)
	MRPL1	39S ribosomal protein L1, mitochondrial isoform X1. (328 aa)
	MRPL47	39S ribosomal protein L47, mitochondrial isoform X1. (261 aa)
	MRPL19	39S ribosomal protein L19, mitochondrial. (292 aa)
	MRPL28	39S ribosomal protein L28, mitochondrial isoform X1. (256 aa)
	MRPL22	39S ribosomal protein L22, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL22 family. (222 aa)
	MRPL58	peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X1. (206 aa)
	MRPL38	39S ribosomal protein L38, mitochondrial. (380 aa)
	MRPL48	39S ribosomal protein L48, mitochondrial. (212 aa)
	MRPL44	39S ribosomal protein L44, mitochondrial. (332 aa)
	MRPL40	39S ribosomal protein L40, mitochondrial. (203 aa)
	MRPL9	39S ribosomal protein L9, mitochondrial. (261 aa)
	MRPL33	39S ribosomal protein L33, mitochondrial. (65 aa)
	MRPL55	39S ribosomal protein L55, mitochondrial isoform X1. (212 aa)
	MRPL2	39S ribosomal protein L2, mitochondrial. (306 aa)
	MRPL14	39S ribosomal protein L14, mitochondrial. (145 aa)
	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1. (222 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GADD45GIP1	MRPL1	A0A341D8D2	A0A341C515	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L1, mitochondrial isoform X1.	0.855
GADD45GIP1	MRPL10	A0A341D8D2	A0A341BG34	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L10, mitochondrial isoform X1.	0.916
GADD45GIP1	MRPL11	A0A341D8D2	A0A341BRA1	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.	0.972
GADD45GIP1	MRPL13	A0A341D8D2	A0A341B5H6	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L13, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.916
GADD45GIP1	MRPL14	A0A341D8D2	A0A341D4F6	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L14, mitochondrial.	0.926
GADD45GIP1	MRPL15	A0A341D8D2	A0A341B6H4	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L15, mitochondrial.	0.921
GADD45GIP1	MRPL16	A0A341D8D2	A0A341BSE5	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.	0.945
GADD45GIP1	MRPL18	A0A341D8D2	A0A341BPT5	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L18, mitochondrial isoform X1.	0.921
GADD45GIP1	MRPL19	A0A341D8D2	A0A341CIK6	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L19, mitochondrial.	0.921
GADD45GIP1	MRPL2	A0A341D8D2	A0A341D3T7	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L2, mitochondrial.	0.925
GADD45GIP1	MRPL22	A0A341D8D2	A0A341CQ41	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L22, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL22 family.	0.917
GADD45GIP1	MRPL24	A0A341D8D2	A0A341BPH7	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L24, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL24 family.	0.939
GADD45GIP1	MRPL28	A0A341D8D2	A0A341CLN2	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L28, mitochondrial isoform X1.	0.944
GADD45GIP1	MRPL3	A0A341D8D2	A0A341AI20	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L3, mitochondrial; Belongs to the universal ribosomal protein uL3 family.	0.914
GADD45GIP1	MRPL33	A0A341D8D2	A0A341D0X1	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L33, mitochondrial.	0.922
GADD45GIP1	MRPL35	A0A341D8D2	A0A341B9V2	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L35, mitochondrial.	0.917
GADD45GIP1	MRPL38	A0A341D8D2	A0A341CS40	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L38, mitochondrial.	0.918
GADD45GIP1	MRPL39	A0A341D8D2	A0A341ADZ4	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L39, mitochondrial isoform X1.	0.914
GADD45GIP1	MRPL4	A0A341D8D2	A0A341BJB7	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L4, mitochondrial isoform X1.	0.937
GADD45GIP1	MRPL40	A0A341D8D2	A0A341CXP7	Growth arrest and DNA damage-inducible proteins-interacting protein 1.	39S ribosomal protein L40, mitochondrial.	0.980