STRINGSTRING
SNRPN SNRPN RBM42 RBM42 TXNL4B TXNL4B SF3B3 SF3B3 PRPF8 PRPF8 DDX23 DDX23 PHF5A PHF5A LSM10 LSM10 SF3A3 SF3A3 LRMDA LRMDA SF3A2 SF3A2 LOC112397904 LOC112397904 LOC112397899 LOC112397899 LOC112398861 LOC112398861 SNRPA1 SNRPA1 SNRPB SNRPB USP39 USP39 PPIH PPIH SNRNP200 SNRNP200 RBM41 RBM41 SF3B5 SF3B5 SF3B2 SF3B2 SART1 SART1 PRPF6 PRPF6 SNRPE SNRPE WDR53 WDR53 DDX46 DDX46 SNRPB2 SNRPB2 SNRPF SNRPF SNRPG SNRPG SNRNP27 SNRNP27 SF3B1 SF3B1 SNRPD1 SNRPD1 DHX8 DHX8 EFTUD2 EFTUD2 PRPF4 PRPF4 SNRPD3 SNRPD3 SF3B6 SF3B6 PRPF3 PRPF3 SF3B4 SF3B4 SNRPC SNRPC SNRNP40 SNRNP40 SNRNP70 SNRNP70 SNRPA SNRPA SNRPD2 SNRPD2 SPACA6 SPACA6 SF3A1 SF3A1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
RBM42RNA-binding protein 42 isoform X1. (477 aa)
TXNL4BThioredoxin-like protein 4B isoform X1. (179 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (818 aa)
PHF5APHD finger-like domain-containing protein 5A. (110 aa)
LSM10U7 snRNA-associated Sm-like protein LSm10. (123 aa)
SF3A3Splicing factor 3A subunit 3. (501 aa)
LRMDALeucine-rich melanocyte differentiation-associated protein isoform X1. (226 aa)
SF3A2Splicing factor 3A subunit 2. (443 aa)
LOC112397904U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
LOC112397899U4/U6 small nuclear ribonucleoprotein Prp31-like. (151 aa)
LOC112398861Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (79 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (255 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2 isoform X1. (565 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
RBM41RNA-binding protein 41. (399 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SF3B2Splicing factor 3B subunit 2 isoform X1. (896 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1. (830 aa)
PRPF6pre-mRNA-processing factor 6. (941 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
WDR53WD repeat-containing protein 53. (358 aa)
DDX46Probable ATP-dependent RNA helicase DDX46 isoform X1. (1032 aa)
SNRPB2U2 small nuclear ribonucleoprotein B'. (225 aa)
SNRPFSmall nuclear ribonucleoprotein F isoform X1. (86 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRNP27U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (155 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1377 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
DHX8ATP-dependent RNA helicase DHX8. (1214 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1. (523 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1. (683 aa)
SF3B4Splicing factor 3B subunit 4. (424 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (358 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa isoform X1. (439 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (282 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
SPACA6Sperm acrosome membrane-associated protein 6. (324 aa)
SF3A1Splicing factor 3A subunit 1. (793 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.