STRINGSTRING
DHX9 DHX9 HNRNPA3 HNRNPA3 SYNCRIP SYNCRIP NCBP1 NCBP1 U2AF1L4 U2AF1L4 SRSF11 SRSF11 PRPF40A PRPF40A LOC112393288 LOC112393288 PCBP2 PCBP2 HNRNPA1 HNRNPA1 PRPF40B PRPF40B PRPF4B PRPF4B TRA2A TRA2A RBM6 RBM6 RBM25 RBM25 ZC2HC1C ZC2HC1C PRR3 PRR3 PTBP1 PTBP1 SRSF5 SRSF5 ERH ERH SRSF9 SRSF9 SFPQ SFPQ PRPF38B PRPF38B RBM23 RBM23 LOC112398094 LOC112398094 LUC7L3 LUC7L3 LOC112397519 LOC112397519 LOC112398678 LOC112398678 RBM39 RBM39 FUS FUS PRPF39 PRPF39 YBX1 YBX1 ELAVL3 ELAVL3 HNRNPAB HNRNPAB ILF3 ILF3 SRRT SRRT HNRNPH2 HNRNPH2 HNRNPM HNRNPM SRSF6 SRSF6 LOC112401079 LOC112401079 LOC112401310 LOC112401310 ILF2 ILF2 RBM14 RBM14 HNRNPUL2 HNRNPUL2 SF1 SF1 TARDBP TARDBP LOC112403690 LOC112403690 PSPC1 PSPC1 RBM7 RBM7 MATR3 MATR3 HNRNPA0 HNRNPA0 NCBP2 NCBP2 SREK1 SREK1 HNRNPLL HNRNPLL HNRNPK HNRNPK SRSF7 SRSF7 HNRNPU HNRNPU LOC112405963 LOC112405963 HNRNPA2B1 HNRNPA2B1 LOC112405657 LOC112405657 LOC112406628 LOC112406628 U2AF2 U2AF2 LOC112407027 LOC112407027 SRPK2 SRPK2 RBMXL2 RBMXL2 PCBP1 PCBP1 PTBP3 PTBP3 TAF15 TAF15 LOC112408071 LOC112408071 SRSF1 SRSF1 PHAX PHAX NONO NONO U2AF1 U2AF1 ZCCHC8 ZCCHC8 HNRNPD HNRNPD HNRNPDL HNRNPDL PNISR PNISR PAPOLA PAPOLA RBMX RBMX LOC112409354 LOC112409354 TPRG1L TPRG1L SRSF2 SRSF2 LOC112410027 LOC112410027 SLTM SLTM HNRNPC HNRNPC DDX5 DDX5 LOC112413037 LOC112413037 LOC112412854 LOC112412854 HNRNPH1 HNRNPH1 HNRNPF HNRNPF HNRNPH3 HNRNPH3 ZNF318 ZNF318 SRPK1 SRPK1 SRSF3 SRSF3 SRSF10 SRSF10 HNRNPR HNRNPR SRSF4 SRSF4 TRNAU1AP TRNAU1AP TPRG1 TPRG1 SUGP1 SUGP1 TRA2B TRA2B EWSR1 EWSR1 ELAVL2 ELAVL2 HNRNPUL1 HNRNPUL1 HNRNPL HNRNPL LOC112415293 LOC112415293
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DHX9ATP-dependent RNA helicase A isoform X1. (1253 aa)
HNRNPA3Heterogeneous nuclear ribonucleoprotein A3 isoform X1. (377 aa)
SYNCRIPHeterogeneous nuclear ribonucleoprotein Q isoform X1. (623 aa)
NCBP1Nuclear cap-binding protein subunit 1. (790 aa)
U2AF1L4Splicing factor U2AF 26 kDa subunit isoform X2. (237 aa)
SRSF11Serine/arginine-rich splicing factor 11 isoform X1. (489 aa)
PRPF40Apre-mRNA-processing factor 40 homolog A isoform X4. (997 aa)
LOC112393288LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like. (391 aa)
PCBP2poly(RC)-binding protein 2 isoform X1. (366 aa)
HNRNPA1Heterogeneous nuclear ribonucleoprotein A1. (370 aa)
PRPF40Bpre-mRNA-processing factor 40 homolog B isoform X3. (884 aa)
PRPF4BSerine/threonine-protein kinase PRP4 homolog. (1041 aa)
TRA2ATransformer-2 protein homolog alpha isoform X1. (288 aa)
RBM6RNA-binding protein 6 isoform X1. (1122 aa)
RBM25RNA-binding protein 25. (843 aa)
ZC2HC1CZinc finger C2HC domain-containing protein 1C. (528 aa)
PRR3Proline-rich protein 3 isoform X1. (226 aa)
PTBP1Polypyrimidine tract-binding protein 1 isoform X1. (557 aa)
SRSF5Serine/arginine-rich splicing factor 5 isoform X1. (274 aa)
ERHEnhancer of rudimentary homolog isoform X1. (127 aa)
SRSF9Serine/arginine-rich splicing factor 9. (221 aa)
SFPQSplicing factor, proline- and glutamine-rich. (477 aa)
PRPF38BLOW QUALITY PROTEIN: pre-mRNA-splicing factor 38B. (470 aa)
RBM23Probable RNA-binding protein 23 isoform X1. (458 aa)
LOC112398094LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2. (392 aa)
LUC7L3LOW QUALITY PROTEIN: luc7-like protein 3. (491 aa)
LOC112397519RNA binding motif protein, X-linked-like-1. (498 aa)
LOC112398678LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like. (320 aa)
RBM39RNA-binding protein 39 isoform X1. (530 aa)
FUSRNA-binding protein FUS isoform X1. (514 aa)
PRPF39pre-mRNA-processing factor 39 isoform X1. (667 aa)
YBX1LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1. (493 aa)
ELAVL3ELAV-like protein; Belongs to the RRM elav family. (353 aa)
HNRNPABHeterogeneous nuclear ribonucleoprotein A/B isoform X1. (335 aa)
ILF3Interleukin enhancer-binding factor 3 isoform X1. (901 aa)
SRRTSerrate RNA effector molecule homolog. (873 aa)
HNRNPH2Heterogeneous nuclear ribonucleoprotein H2. (449 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M isoform X1. (730 aa)
SRSF6Serine/arginine-rich splicing factor 6. (345 aa)
LOC112401079LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K-like. (463 aa)
LOC112401310Heterogeneous nuclear ribonucleoprotein A1-like. (258 aa)
ILF2Interleukin enhancer-binding factor 2. (390 aa)
RBM14RNA-binding protein 14 isoform X1. (669 aa)
HNRNPUL2Heterogeneous nuclear ribonucleoprotein U-like protein 2. (748 aa)
SF1Splicing factor 1 isoform X1. (613 aa)
TARDBPTAR DNA-binding protein 43. (414 aa)
LOC112403690RNA-binding motif protein, X chromosome-like. (115 aa)
PSPC1Paraspeckle component 1. (430 aa)
RBM7RNA-binding protein 7. (266 aa)
MATR3Matrin-3 isoform X1. (897 aa)
HNRNPA0Heterogeneous nuclear ribonucleoprotein A0. (302 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
SREK1Splicing regulatory glutamine/lysine-rich protein 1 isoform X1. (629 aa)
HNRNPLLHeterogeneous nuclear ribonucleoprotein L-like isoform X1. (544 aa)
HNRNPKHeterogeneous nuclear ribonucleoprotein K isoform X1. (464 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform X1. (825 aa)
LOC112405963Lupus La protein homolog isoform X1. (406 aa)
HNRNPA2B1Heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1. (353 aa)
LOC112405657LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K-like. (462 aa)
LOC112406628LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like. (273 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (452 aa)
LOC112407027LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein U-like protein 2. (530 aa)
SRPK2SRSF protein kinase 2 isoform X1. (717 aa)
RBMXL2LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked-like-2. (272 aa)
PCBP1poly(RC)-binding protein 1. (356 aa)
PTBP3Polypyrimidine tract-binding protein 3 isoform X1. (555 aa)
TAF15LOW QUALITY PROTEIN: TATA-binding protein-associated factor 2N. (457 aa)
LOC112408071Heterogeneous nuclear ribonucleoproteins A2/B1-like isoform X1. (341 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X1. (248 aa)
PHAXPhosphorylated adapter RNA export protein. (394 aa)
NONOnon-POU domain-containing octamer-binding protein. (470 aa)
U2AF1Splicing factor U2AF 35 kDa subunit. (164 aa)
ZCCHC8Zinc finger CCHC domain-containing protein 8 isoform X1. (706 aa)
HNRNPDHeterogeneous nuclear ribonucleoprotein D0 isoform X1. (355 aa)
HNRNPDLHeterogeneous nuclear ribonucleoprotein D-like. (420 aa)
PNISRArginine/serine-rich protein PNISR isoform X1. (814 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (744 aa)
RBMXRNA-binding motif protein, X chromosome. (391 aa)
LOC112409354Putative RNA-binding protein Luc7-like 1 isoform X1. (371 aa)
TPRG1LTumor protein p63-regulated gene 1-like protein. (193 aa)
SRSF2Serine/arginine-rich splicing factor 2. (221 aa)
LOC112410027Heterogeneous nuclear ribonucleoprotein A1-like. (229 aa)
SLTMSAFB-like transcription modulator isoform X1. (1041 aa)
HNRNPCHeterogeneous nuclear ribonucleoproteins C1/C2 isoform X1. (306 aa)
DDX5Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (614 aa)
LOC112413037LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein H-like. (467 aa)
LOC112412854Heterogeneous nuclear ribonucleoprotein A1-like. (317 aa)
HNRNPH1Heterogeneous nuclear ribonucleoprotein H isoform X1. (492 aa)
HNRNPFHeterogeneous nuclear ribonucleoprotein F. (416 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3 isoform X1. (346 aa)
ZNF318Zinc finger protein 318 isoform X1. (2139 aa)
SRPK1SRSF protein kinase 1. (639 aa)
SRSF3Serine/arginine-rich splicing factor 3. (164 aa)
SRSF10Serine/arginine-rich splicing factor 10 isoform X1. (262 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R isoform X1. (636 aa)
SRSF4Serine/arginine-rich splicing factor 4. (485 aa)
TRNAU1APtRNA selenocysteine 1-associated protein 1. (287 aa)
TPRG1LOW QUALITY PROTEIN: tumor protein p63-regulated gene 1 protein. (285 aa)
SUGP1SURP and G-patch domain-containing protein 1 isoform X1. (635 aa)
TRA2BTransformer-2 protein homolog beta isoform X1. (288 aa)
EWSR1RNA-binding protein EWS isoform X1. (656 aa)
ELAVL2ELAV-like protein; Belongs to the RRM elav family. (391 aa)
HNRNPUL1Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1. (858 aa)
HNRNPLLOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein L. (590 aa)
LOC112415293Heterogeneous nuclear ribonucleoprotein A1-like. (353 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
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