16 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	U2AF1L4	Splicing factor U2AF 26 kDa subunit isoform X2. (237 aa)
	TRA2A	Transformer-2 protein homolog alpha isoform X1. (288 aa)
	SRSF5	Serine/arginine-rich splicing factor 5 isoform X1. (274 aa)
	SRSF9	Serine/arginine-rich splicing factor 9. (221 aa)
	SRSF6	Serine/arginine-rich splicing factor 6. (345 aa)
	SRSF7	Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
	LOC112406628	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like. (273 aa)
	SRSF1	Serine/arginine-rich splicing factor 1 isoform X1. (248 aa)
	U2AF1	Splicing factor U2AF 35 kDa subunit. (164 aa)
	PAPOLA	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (744 aa)
	SRSF2	Serine/arginine-rich splicing factor 2. (221 aa)
	SRPK1	SRSF protein kinase 1. (639 aa)
	SRSF3	Serine/arginine-rich splicing factor 3. (164 aa)
	SRSF10	Serine/arginine-rich splicing factor 10 isoform X1. (262 aa)
	SRSF4	Serine/arginine-rich splicing factor 4. (485 aa)
	TRA2B	Transformer-2 protein homolog beta isoform X1. (288 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC112406628	PAPOLA	A0A341C952	A0A341CLJ9	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.876
LOC112406628	SRSF1	A0A341C952	A0A341CFN8	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 1 isoform X1.	0.810
LOC112406628	SRSF2	A0A341C952	A0A341CNU2	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 2.	0.638
LOC112406628	SRSF3	A0A341C952	A0A341D569	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 3.	0.730
LOC112406628	SRSF4	A0A341C952	A0A341D6N6	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 4.	0.765
LOC112406628	SRSF5	A0A341C952	A0A341B1F1	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 5 isoform X1.	0.802
LOC112406628	SRSF6	A0A341C952	A0A341BIP3	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 6.	0.762
LOC112406628	SRSF7	A0A341C952	A0A341C4M2	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 7 isoform X1.	0.752
LOC112406628	SRSF9	A0A341C952	A0A341B2Z1	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Serine/arginine-rich splicing factor 9.	0.792
LOC112406628	U2AF1	A0A341C952	A0A341CHL7	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Splicing factor U2AF 35 kDa subunit.	0.647
LOC112406628	U2AF1L4	A0A341C952	A0A341AKS0	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	Splicing factor U2AF 26 kDa subunit isoform X2.	0.647
PAPOLA	LOC112406628	A0A341CLJ9	A0A341C952	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like.	0.876
PAPOLA	SRSF1	A0A341CLJ9	A0A341CFN8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 1 isoform X1.	0.969
PAPOLA	SRSF2	A0A341CLJ9	A0A341CNU2	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 2.	0.947
PAPOLA	SRSF3	A0A341CLJ9	A0A341D569	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 3.	0.947
PAPOLA	SRSF4	A0A341CLJ9	A0A341D6N6	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 4.	0.747
PAPOLA	SRSF5	A0A341CLJ9	A0A341B1F1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 5 isoform X1.	0.968
PAPOLA	SRSF6	A0A341CLJ9	A0A341BIP3	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 6.	0.747
PAPOLA	SRSF7	A0A341CLJ9	A0A341C4M2	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 7 isoform X1.	0.949
PAPOLA	SRSF9	A0A341CLJ9	A0A341B2Z1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Serine/arginine-rich splicing factor 9.	0.968