STRINGSTRING
SMG7 SMG7 MAGOHB MAGOHB RBM8A RBM8A LOC112392030 LOC112392030 UPF2 UPF2 SARNP SARNP EIF4B EIF4B EIF4E EIF4E PAN2 PAN2 PABPN1L PABPN1L SMG6 SMG6 PIH1D3 PIH1D3 POLDIP3 POLDIP3 DDX39B DDX39B MAGOH MAGOH PABPC4 PABPC4 ZGRF1 ZGRF1 LOC112396076 LOC112396076 PAIP1 PAIP1 ACIN1 ACIN1 EIF4E2 EIF4E2 LOC112397848 LOC112397848 PABPC5 PABPC5 THOC3 THOC3 LOC112397693 LOC112397693 EIF4E1B EIF4E1B SMG1 SMG1 PABPC4L PABPC4L CASC3 CASC3 EIF4E3 EIF4E3 THOC7 THOC7 LOC112400763 LOC112400763 PABPC1L PABPC1L EIF4H EIF4H THOC2 THOC2 CHTOP CHTOP SMG5 SMG5 EIF4A1 EIF4A1 EIF4G3 EIF4G3 UPF3B UPF3B ZC3H11A ZC3H11A UPF3A UPF3A LOC112405011 LOC112405011 SAP18 SAP18 LOC112406614 LOC112406614 FYTTD1 FYTTD1 PAN3 PAN3 PABPC1 PABPC1 EIF4G2 EIF4G2 SMG8 SMG8 THOC1 THOC1 THOC6 THOC6 RNPS1 RNPS1 ALYREF ALYREF CUNH12orf50 CUNH12orf50 LOC112411041 LOC112411041 PNN PNN EIF4A3 EIF4A3 TTC31 TTC31 EIF4EBP2 EIF4EBP2 EIF4EBP1 EIF4EBP1 LOC112414374 LOC112414374 DDX39A DDX39A EIF4G1 EIF4G1 PNRC2 PNRC2 UPF1 UPF1 THOC5 THOC5 EIF4A2 EIF4A2 SMG9 SMG9 RBM3 RBM3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMG7Protein SMG7 isoform X1. (1216 aa)
MAGOHBProtein mago nashi homolog 2 isoform X1. (148 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
LOC112392030Polyadenylate-binding protein 1-like 2. (212 aa)
UPF2Regulator of nonsense transcripts 2 isoform X1. (1270 aa)
SARNPSAP domain-containing ribonucleoprotein. (210 aa)
EIF4BEukaryotic translation initiation factor 4B isoform X1. (614 aa)
EIF4EEukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (303 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1202 aa)
PABPN1LEmbryonic polyadenylate-binding protein 2 isoform X1. (277 aa)
SMG6Telomerase-binding protein EST1A isoform X2. (1411 aa)
PIH1D3Protein PIH1D3. (205 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X1. (421 aa)
DDX39BSpliceosome RNA helicase DDX39B. (507 aa)
MAGOHProtein mago nashi homolog. (146 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (660 aa)
ZGRF1Protein ZGRF1. (2099 aa)
LOC112396076ATP-dependent RNA helicase DDX3X-like; Belongs to the DEAD box helicase family. (656 aa)
PAIP1Polyadenylate-binding protein-interacting protein 1. (367 aa)
ACIN1Apoptotic chromatin condensation inducer in the nucleus isoform X1. (1337 aa)
EIF4E2Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family. (245 aa)
LOC112397848Polyadenylate-binding protein 2-like. (135 aa)
PABPC5Polyadenylate-binding protein 5. (382 aa)
THOC3THO complex subunit 3. (351 aa)
LOC112397693RNA-binding protein with serine-rich domain 1-like. (358 aa)
EIF4E1BEukaryotic translation initiation factor 4E type 1B; Belongs to the eukaryotic initiation factor 4E family. (253 aa)
SMG1Serine/threonine-protein kinase SMG1 isoform X1; Belongs to the PI3/PI4-kinase family. (3658 aa)
PABPC4LLOW QUALITY PROTEIN: polyadenylate-binding protein 4-like. (412 aa)
CASC3Protein CASC3. (697 aa)
EIF4E3Eukaryotic translation initiation factor 4E type 3; Belongs to the eukaryotic initiation factor 4E family. (145 aa)
THOC7THO complex subunit 7 homolog. (204 aa)
LOC112400763LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like. (370 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (612 aa)
EIF4HEukaryotic translation initiation factor 4H. (318 aa)
THOC2THO complex subunit 2 isoform X1. (1642 aa)
CHTOPChromatin target of PRMT1 protein isoform X1. (249 aa)
SMG5Protein SMG5 isoform X1. (1016 aa)
EIF4A1Eukaryotic initiation factor 4A-I isoform X1; Belongs to the DEAD box helicase family. (406 aa)
EIF4G3Eukaryotic translation initiation factor 4 gamma 3. (1076 aa)
UPF3BRegulator of nonsense transcripts 3B isoform X1. (490 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A isoform X1. (822 aa)
UPF3ARegulator of nonsense transcripts 3A. (418 aa)
LOC112405011LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like. (333 aa)
SAP18Histone deacetylase complex subunit SAP18. (172 aa)
LOC112406614LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E-like; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
FYTTD1UAP56-interacting factor. (317 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (740 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
EIF4G2LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 2. (1008 aa)
SMG8Protein SMG8. (991 aa)
THOC1THO complex subunit 1. (657 aa)
THOC6THO complex subunit 6 homolog isoform X1. (341 aa)
RNPS1RNA-binding protein with serine-rich domain 1 isoform X1. (305 aa)
ALYREFTHO complex subunit 4. (187 aa)
CUNH12orf50Uncharacterized protein C12orf50 homolog. (375 aa)
LOC112411041LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4B-like. (580 aa)
PNNPinin. (757 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
TTC31LOW QUALITY PROTEIN: tetratricopeptide repeat protein 31. (365 aa)
EIF4EBP2Eukaryotic translation initiation factor 4E-binding protein 2. (120 aa)
EIF4EBP1Eukaryotic translation initiation factor 4E-binding protein 1. (118 aa)
LOC112414374Eukaryotic translation initiation factor 4 gamma 3-like. (536 aa)
DDX39AATP-dependent RNA helicase DDX39A. (427 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1 isoform X1. (1601 aa)
PNRC2Proline-rich nuclear receptor coactivator 2. (139 aa)
UPF1Regulator of nonsense transcripts 1. (1289 aa)
THOC5THO complex subunit 5 homolog. (681 aa)
EIF4A2Eukaryotic initiation factor 4A-II isoform X1; Belongs to the DEAD box helicase family. (408 aa)
SMG9Protein SMG9 isoform X1. (520 aa)
RBM3RNA-binding protein 3 isoform X1. (156 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.