25 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
	NOL3	Nucleolar protein 3. (202 aa)
	CELF2	LOW QUALITY PROTEIN: CUGBP Elav-like family member 2. (515 aa)
	SFSWAP	Splicing factor, suppressor of white-apricot homolog isoform X5. (994 aa)
	CELF5	CUGBP Elav-like family member 5 isoform X2. (382 aa)
	HDGFL1	Hepatoma-derived growth factor-like protein 1. (233 aa)
	YTHDC1	YTH domain-containing protein 1 isoform X1. (737 aa)
	PUF60	LOW QUALITY PROTEIN: poly(U)-binding-splicing factor PUF60. (560 aa)
	LOC112398094	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2. (392 aa)
	LUC7L3	LOW QUALITY PROTEIN: luc7-like protein 3. (491 aa)
	PRPF39	pre-mRNA-processing factor 39 isoform X1. (667 aa)
	SRSF6	Serine/arginine-rich splicing factor 6. (345 aa)
	KHDC4	KH homology domain-containing protein 4 isoform X1. (610 aa)
	CELF1	CUGBP Elav-like family member 1 isoform X1. (514 aa)
	SLU7	pre-mRNA-splicing factor SLU7 isoform X1. (603 aa)
	PTBP2	Polypyrimidine tract-binding protein 2 isoform X1. (537 aa)
	SRSF1	Serine/arginine-rich splicing factor 1 isoform X1. (248 aa)
	LOC112409390	Putative RNA-binding protein Luc7-like 1. (285 aa)
	LOC112409354	Putative RNA-binding protein Luc7-like 1 isoform X1. (371 aa)
	CELF6	CUGBP Elav-like family member 6. (316 aa)
	CELF3	CUGBP Elav-like family member 3 isoform X1. (466 aa)
	SETX	Probable helicase senataxin isoform X1. (2684 aa)
	LOC112411956	pre-mRNA-splicing factor ISY1 homolog. (283 aa)
	LOC112413458	CUGBP Elav-like family member 4. (433 aa)
	HDGFL3	Hepatoma-derived growth factor-related protein 3. (205 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELF1	PTBP2	A0A341BNT9	A0A341BWC6	CUGBP Elav-like family member 1 isoform X1.	Polypyrimidine tract-binding protein 2 isoform X1.	0.410
CELF2	PTBP2	A0A341ALD0	A0A341BWC6	LOW QUALITY PROTEIN: CUGBP Elav-like family member 2.	Polypyrimidine tract-binding protein 2 isoform X1.	0.525
CELF3	PTBP2	A0A341CVA7	A0A341BWC6	CUGBP Elav-like family member 3 isoform X1.	Polypyrimidine tract-binding protein 2 isoform X1.	0.522
CELF3	SRSF1	A0A341CVA7	A0A341CFN8	CUGBP Elav-like family member 3 isoform X1.	Serine/arginine-rich splicing factor 1 isoform X1.	0.431
HDGFL1	SRSF1	A0A341B2V7	A0A341CFN8	Hepatoma-derived growth factor-like protein 1.	Serine/arginine-rich splicing factor 1 isoform X1.	0.463
HDGFL3	SRSF1	A0A341D5G1	A0A341CFN8	Hepatoma-derived growth factor-related protein 3.	Serine/arginine-rich splicing factor 1 isoform X1.	0.543
KHDC4	LUC7L3	A0A341BMA0	A0A341B6D2	KH homology domain-containing protein 4 isoform X1.	LOW QUALITY PROTEIN: luc7-like protein 3.	0.504
LOC112398094	LUC7L3	A0A341B616	A0A341B6D2	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	LOW QUALITY PROTEIN: luc7-like protein 3.	0.518
LOC112398094	PRPF39	A0A341B616	A0A341BBZ0	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	pre-mRNA-processing factor 39 isoform X1.	0.759
LOC112398094	SNRPC	A0A341B616	A0A341D540	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.906
LOC112398094	SRSF1	A0A341B616	A0A341CFN8	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	Serine/arginine-rich splicing factor 1 isoform X1.	0.438
LOC112398094	SRSF6	A0A341B616	A0A341BIP3	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	Serine/arginine-rich splicing factor 6.	0.564
LOC112409354	LUC7L3	A0A341CMP2	A0A341B6D2	Putative RNA-binding protein Luc7-like 1 isoform X1.	LOW QUALITY PROTEIN: luc7-like protein 3.	0.520
LOC112409354	PRPF39	A0A341CMP2	A0A341BBZ0	Putative RNA-binding protein Luc7-like 1 isoform X1.	pre-mRNA-processing factor 39 isoform X1.	0.759
LOC112409354	SNRPC	A0A341CMP2	A0A341D540	Putative RNA-binding protein Luc7-like 1 isoform X1.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.906
LOC112409354	SRSF1	A0A341CMP2	A0A341CFN8	Putative RNA-binding protein Luc7-like 1 isoform X1.	Serine/arginine-rich splicing factor 1 isoform X1.	0.447
LOC112409354	SRSF6	A0A341CMP2	A0A341BIP3	Putative RNA-binding protein Luc7-like 1 isoform X1.	Serine/arginine-rich splicing factor 6.	0.564
LOC112409390	LUC7L3	A0A341CKT0	A0A341B6D2	Putative RNA-binding protein Luc7-like 1.	LOW QUALITY PROTEIN: luc7-like protein 3.	0.520
LOC112409390	PRPF39	A0A341CKT0	A0A341BBZ0	Putative RNA-binding protein Luc7-like 1.	pre-mRNA-processing factor 39 isoform X1.	0.759
LOC112409390	SNRPC	A0A341CKT0	A0A341D540	Putative RNA-binding protein Luc7-like 1.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.906