17 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MESP1	Mesoderm posterior protein 1. (265 aa)
	DAND5	LOW QUALITY PROTEIN: DAN domain family member 5. (185 aa)
	NEUROD1	Neurogenic differentiation factor. (356 aa)
	TRAF2	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (516 aa)
	CER1	Cerberus isoform X1. (273 aa)
	GSC	Homeobox protein goosecoid. (256 aa)
	FGF5	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (270 aa)
	PAX6	Paired box protein Pax-6 isoform X1. (493 aa)
	TRAF5	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (558 aa)
	HNF4A	Hepatocyte nuclear factor 4-alpha isoform X1. (484 aa)
	PDGFRA	Platelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development. (1089 aa)
	TBX6	T-box transcription factor TBX6 isoform X1. (463 aa)
	TBXT	Brachyury protein isoform X1. (435 aa)
	SOX17	LOW QUALITY PROTEIN: transcription factor SOX-17. (207 aa)
	MSX1	Homeobox protein MSX-1. (303 aa)
	TRAF3IP2	Adapter protein CIKS isoform X1. (564 aa)
	FGF8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (244 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAND5	FGF8	A0A341D821	A0A341AJJ9	LOW QUALITY PROTEIN: DAN domain family member 5.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.501
FGF5	FGF8	A0A341C505	A0A341AJJ9	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.595
FGF5	PAX6	A0A341C505	A0A341C368	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Paired box protein Pax-6 isoform X1.	0.524
FGF5	PDGFRA	A0A341C505	A0A341BI39	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development.	0.926
FGF5	SOX17	A0A341C505	A0A341B9M3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	LOW QUALITY PROTEIN: transcription factor SOX-17.	0.637
FGF8	DAND5	A0A341AJJ9	A0A341D821	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	LOW QUALITY PROTEIN: DAN domain family member 5.	0.501
FGF8	FGF5	A0A341AJJ9	A0A341C505	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.595
FGF8	MSX1	A0A341AJJ9	A0A341B7F1	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox protein MSX-1.	0.522
FGF8	PAX6	A0A341AJJ9	A0A341C368	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Paired box protein Pax-6 isoform X1.	0.547
FGF8	PDGFRA	A0A341AJJ9	A0A341BI39	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development.	0.927
FGF8	SOX17	A0A341AJJ9	A0A341B9M3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	LOW QUALITY PROTEIN: transcription factor SOX-17.	0.416
FGF8	TBX6	A0A341AJJ9	A0A341BF73	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	T-box transcription factor TBX6 isoform X1.	0.545
GSC	HNF4A	A0A341CMC8	A0A341BLJ9	Homeobox protein goosecoid.	Hepatocyte nuclear factor 4-alpha isoform X1.	0.692
HNF4A	GSC	A0A341BLJ9	A0A341CMC8	Hepatocyte nuclear factor 4-alpha isoform X1.	Homeobox protein goosecoid.	0.692
MSX1	FGF8	A0A341B7F1	A0A341AJJ9	Homeobox protein MSX-1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.522
MSX1	SOX17	A0A341B7F1	A0A341B9M3	Homeobox protein MSX-1.	LOW QUALITY PROTEIN: transcription factor SOX-17.	0.461
NEUROD1	PAX6	A0A341D5U2	A0A341C368	Neurogenic differentiation factor.	Paired box protein Pax-6 isoform X1.	0.765
NEUROD1	SOX17	A0A341D5U2	A0A341B9M3	Neurogenic differentiation factor.	LOW QUALITY PROTEIN: transcription factor SOX-17.	0.436
PAX6	FGF5	A0A341C368	A0A341C505	Paired box protein Pax-6 isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.524
PAX6	FGF8	A0A341C368	A0A341AJJ9	Paired box protein Pax-6 isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.547