45 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F2RL3	Proteinase-activated receptor 4; Belongs to the G-protein coupled receptor 1 family. (380 aa)
	HRG	LOW QUALITY PROTEIN: histidine-rich glycoprotein. (427 aa)
	COMP	Cartilage oligomeric matrix protein. (756 aa)
	BLOC1S3	Biogenesis of lysosome-related organelles complex 1 subunit 3. (148 aa)
	AXL	Tyrosine-protein kinase receptor UFO. (887 aa)
	RAP2B	Ras-related protein Rap-2b. (183 aa)
	P2RY12	P2Y purinoceptor 12. (339 aa)
	FN1	Fibronectin isoform X5. (2478 aa)
	GATA1	Erythroid transcription factor. (413 aa)
	ENTPD2	Ectonucleoside triphosphate diphosphohydrolase 2 isoform X2; Belongs to the GDA1/CD39 NTPase family. (588 aa)
	ITGB3	Integrin beta; Belongs to the integrin beta chain family. (789 aa)
	GNA13	Guanine nucleotide-binding protein subunit alpha-13. (282 aa)
	CD40LG	CD40 ligand; Cytokine that acts as a ligand to CD40/TNFRSF5. Costimulates T-cell proliferation and cytokine production. Involved in immunoglobulin class switching. (261 aa)
	ADRA2A	LOW QUALITY PROTEIN: alpha-2A adrenergic receptor. (430 aa)
	PPBP	C-X-C motif chemokine. (119 aa)
	LOC112405696	C-X-C motif chemokine. (112 aa)
	F2	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family. (623 aa)
	TSPAN32	Tetraspanin-32; Belongs to the tetraspanin (TM4SF) family. (329 aa)
	PEAR1	Platelet endothelial aggregation receptor 1 isoform X1. (1041 aa)
	FERMT3	Fermitin family homolog 3. (663 aa)
	PDGFRA	Platelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development. (1089 aa)
	BLOC1S4	Biogenesis of lysosome-related organelles complex 1 subunit 4. (264 aa)
	SLC7A11	Cystine/glutamate transporter isoform X1. (615 aa)
	ADRA2C	alpha-2C adrenergic receptor. (518 aa)
	FZD6	Frizzled-6; Belongs to the G-protein coupled receptor Fz/Smo family. (712 aa)
	ADRA2B	alpha-2B adrenergic receptor isoform X1. (447 aa)
	MERTK	Tyrosine-protein kinase Mer. (999 aa)
	STXBP3	Syntaxin-binding protein 3; Belongs to the STXBP/unc-18/SEC1 family. (592 aa)
	PLEK	Pleckstrin. (350 aa)
	UBASH3B	Ubiquitin-associated and SH3 domain-containing protein B isoform X1. (649 aa)
	RAP2A	Ras-related protein Rap-2a isoform X1. (183 aa)
	LOC112392054	Fibrinogen alpha chain-like. (460 aa)
	PTPN6	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	P2RX1	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. Belongs to the P2X receptor family. (512 aa)
	VWF	Von Willebrand factor. (2804 aa)
	F2R	Proteinase-activated receptor 1; Belongs to the G-protein coupled receptor 1 family. (427 aa)
	FGA	Fibrinogen alpha chain. (407 aa)
	TYRO3	Tyrosine-protein kinase receptor TYRO3. (822 aa)
	FGB	Fibrinogen beta chain isoform X1. (495 aa)
	FGG	Fibrinogen gamma chain isoform X1. (445 aa)
	STXBP1	Syntaxin-binding protein 1 isoform X1; Belongs to the STXBP/unc-18/SEC1 family. (580 aa)
	SERPINE2	Glia-derived nexin; Belongs to the serpin family. (397 aa)
	WNT3A	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
	TREML1	Trem-like transcript 1 protein isoform X1. (315 aa)
	SRF	Serum response factor isoform X1. (535 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADRA2A	ADRA2B	A0A341CD24	A0A341BBS5	LOW QUALITY PROTEIN: alpha-2A adrenergic receptor.	alpha-2B adrenergic receptor isoform X1.	0.471
ADRA2A	ADRA2C	A0A341CD24	A0A341BDP1	LOW QUALITY PROTEIN: alpha-2A adrenergic receptor.	alpha-2C adrenergic receptor.	0.419
ADRA2A	GNA13	A0A341CD24	A0A341CP55	LOW QUALITY PROTEIN: alpha-2A adrenergic receptor.	Guanine nucleotide-binding protein subunit alpha-13.	0.908
ADRA2A	PEAR1	A0A341CD24	A0A341BPF3	LOW QUALITY PROTEIN: alpha-2A adrenergic receptor.	Platelet endothelial aggregation receptor 1 isoform X1.	0.683
ADRA2B	ADRA2A	A0A341BBS5	A0A341CD24	alpha-2B adrenergic receptor isoform X1.	LOW QUALITY PROTEIN: alpha-2A adrenergic receptor.	0.471
ADRA2B	ADRA2C	A0A341BBS5	A0A341BDP1	alpha-2B adrenergic receptor isoform X1.	alpha-2C adrenergic receptor.	0.473
ADRA2B	GNA13	A0A341BBS5	A0A341CP55	alpha-2B adrenergic receptor isoform X1.	Guanine nucleotide-binding protein subunit alpha-13.	0.908
ADRA2B	P2RX1	A0A341BBS5	A0A341AI23	alpha-2B adrenergic receptor isoform X1.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. Belongs to the P2X receptor family.	0.408
ADRA2C	ADRA2A	A0A341BDP1	A0A341CD24	alpha-2C adrenergic receptor.	LOW QUALITY PROTEIN: alpha-2A adrenergic receptor.	0.419
ADRA2C	ADRA2B	A0A341BDP1	A0A341BBS5	alpha-2C adrenergic receptor.	alpha-2B adrenergic receptor isoform X1.	0.473
ADRA2C	GNA13	A0A341BDP1	A0A341CP55	alpha-2C adrenergic receptor.	Guanine nucleotide-binding protein subunit alpha-13.	0.908
AXL	P2RY12	A0A341DCJ1	A0A341DDI6	Tyrosine-protein kinase receptor UFO.	P2Y purinoceptor 12.	0.701
BLOC1S3	BLOC1S4	A0A341DBB4	A0A341BGJ4	Biogenesis of lysosome-related organelles complex 1 subunit 3.	Biogenesis of lysosome-related organelles complex 1 subunit 4.	0.970
BLOC1S4	BLOC1S3	A0A341BGJ4	A0A341DBB4	Biogenesis of lysosome-related organelles complex 1 subunit 4.	Biogenesis of lysosome-related organelles complex 1 subunit 3.	0.970
CD40LG	VWF	A0A341CMH1	A0A341AHA8	CD40 ligand; Cytokine that acts as a ligand to CD40/TNFRSF5. Costimulates T-cell proliferation and cytokine production. Involved in immunoglobulin class switching.	Von Willebrand factor.	0.435
COMP	ITGB3	A0A341D8R4	A0A341CPM6	Cartilage oligomeric matrix protein.	Integrin beta; Belongs to the integrin beta chain family.	0.902
F2	F2R	A0A341BRQ7	A0A341AG31	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Proteinase-activated receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.996
F2	F2RL3	A0A341BRQ7	A0A341D843	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Proteinase-activated receptor 4; Belongs to the G-protein coupled receptor 1 family.	0.994
F2	FGA	A0A341BRQ7	A0A341AD80	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Fibrinogen alpha chain.	0.993
F2	FGB	A0A341BRQ7	A0A341AC98	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Fibrinogen beta chain isoform X1.	0.996