STRINGSTRING
KHDRBS1 KHDRBS1 FXR1 FXR1 SRRM1 SRRM1 SRSF4 SRSF4 SRSF3 SRSF3 SF3B4 SF3B4 RBM12B RBM12B LOC112413458 LOC112413458 HNRNPH3 HNRNPH3 ESRP1 ESRP1 HNRNPF HNRNPF HNRNPH1 HNRNPH1 LOC112413069 LOC112413069 LOC112413037 LOC112413037 RAVER2 RAVER2 ILDR2 ILDR2 RBM24 RBM24 KHDRBS2 KHDRBS2 QKI QKI SETX SETX CELF3 CELF3 CELF6 CELF6 CLK3 CLK3 EIF4A3 EIF4A3 DDX17 DDX17 DDX5 DDX5 HABP4 HABP4 RBFOX3 RBFOX3 CCNL2 CCNL2 JMJD6 JMJD6 ERN1 ERN1 RBMX RBMX RBFOX1 RBFOX1 LOC112409347 LOC112409347 METTL4 METTL4 AHNAK2 AHNAK2 SRRM4 SRRM4 DYRK1A DYRK1A SON SON SRSF1 SRSF1 CLK1 CLK1 PTBP3 PTBP3 RBMXL2 RBMXL2 RBM20 RBM20 TIA1 TIA1 LOC112407034 LOC112407034 CEP57L1 CEP57L1 U2AF2 U2AF2 LOC112406138 LOC112406138 LOC112405657 LOC112405657 FASTK FASTK HNRNPU HNRNPU SMU1 SMU1 GRSF1 GRSF1 SRSF7 SRSF7 HNRNPK HNRNPK HNRNPLL HNRNPLL PIK3R1 PIK3R1 HMX2 HMX2 RBM7 RBM7 LOC112404040 LOC112404040 ZPR1 ZPR1 LOC112403224 LOC112403224 LOC112403690 LOC112403690 PTBP2 PTBP2 RBM38 RBM38 RBM10 RBM10 SF1 SF1 CLK2 CLK2 AHNAK AHNAK LOC112402078 LOC112402078 CELF1 CELF1 PRPF19 PRPF19 FXR2 FXR2 FAM172A FAM172A WTAP WTAP REST REST LOC112401079 LOC112401079 PCBP4 PCBP4 SRSF12 SRSF12 SRSF6 SRSF6 HNRNPH2 HNRNPH2 RBM15B RBM15B FAM50A FAM50A CLK4 CLK4 AFF2 AFF2 ZBTB7A ZBTB7A RAVER1 RAVER1 FUS FUS LOC112398608 LOC112398608 RBM39 RBM39 MBNL3 MBNL3 RBFOX2 RBFOX2 TRA2A TRA2A NSRP1 NSRP1 SNW1 SNW1 LOC112394370 LOC112394370 SLC39A5 SLC39A5 RBM5 RBM5 SLC38A2 SLC38A2 ZC3H10 ZC3H10 TMBIM6 TMBIM6 CELF2 CELF2 RBM42 RBM42 ESRP2 ESRP2 LOC112392028 LOC112392028 C1QBP C1QBP NCBP1 NCBP1 RBM8A RBM8A NUP98 NUP98 RBM22 RBM22 RBM11 RBM11 LOC112390558 LOC112390558 MYOD1 MYOD1 RBM15 RBM15 LOC112397519 LOC112397519 RBM23 RBM23 PUF60 PUF60 KHDRBS3 KHDRBS3 YTHDC1 YTHDC1 CELF5 CELF5 LOC112396318 LOC112396318 NCL NCL FMR1 FMR1 CCNL1 CCNL1 CIRBP CIRBP PTBP1 PTBP1 DAZAP1 DAZAP1 PRR3 PRR3 MBNL2 MBNL2 LARP7 LARP7 RBM25 RBM25 THRAP3 THRAP3 ILDR1 ILDR1 PQBP1 PQBP1 MBNL1 MBNL1 NOVA1 NOVA1 PRX PRX AKAP17A AKAP17A SNRNP70 SNRNP70 NOVA2 NOVA2 TRA2B TRA2B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KHDRBS1KH domain-containing, RNA-binding, signal transduction-associated protein 1. (443 aa)
FXR1Fragile X mental retardation syndrome-related protein 1 isoform X1. (650 aa)
SRRM1Serine/arginine repetitive matrix protein 1 isoform X1. (918 aa)
SRSF4Serine/arginine-rich splicing factor 4. (485 aa)
SRSF3Serine/arginine-rich splicing factor 3. (164 aa)
SF3B4Splicing factor 3B subunit 4. (424 aa)
RBM12BRNA-binding protein 12B. (994 aa)
LOC112413458CUGBP Elav-like family member 4. (433 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3 isoform X1. (346 aa)
ESRP1Epithelial splicing regulatory protein 1 isoform X6. (681 aa)
HNRNPFHeterogeneous nuclear ribonucleoprotein F. (416 aa)
HNRNPH1Heterogeneous nuclear ribonucleoprotein H isoform X1. (492 aa)
LOC112413069annotation not available (303 aa)
LOC112413037LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein H-like. (467 aa)
RAVER2Ribonucleoprotein PTB-binding 2 isoform X1. (619 aa)
ILDR2Immunoglobulin-like domain-containing receptor 2 isoform X4. (639 aa)
RBM24RNA-binding protein 24. (236 aa)
KHDRBS2KH domain-containing, RNA-binding, signal transduction-associated protein 2. (253 aa)
QKIProtein quaking isoform X1. (286 aa)
SETXProbable helicase senataxin isoform X1. (2684 aa)
CELF3CUGBP Elav-like family member 3 isoform X1. (466 aa)
CELF6CUGBP Elav-like family member 6. (316 aa)
CLK3Dual specificity protein kinase CLK3 isoform X1. (518 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
DDX17Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family. (652 aa)
DDX5Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (614 aa)
HABP4Intracellular hyaluronan-binding protein 4. (353 aa)
RBFOX3RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (373 aa)
CCNL2cyclin-L2 isoform X1; Belongs to the cyclin family. (523 aa)
JMJD6Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform X1. (431 aa)
ERN1Serine/threonine-protein kinase/endoribonuclease IRE1. (858 aa)
RBMXRNA-binding motif protein, X chromosome. (391 aa)
RBFOX1RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (418 aa)
LOC112409347Uncharacterized protein LOC112409347. (127 aa)
METTL4Methyltransferase-like protein 4 isoform X1; Belongs to the MT-A70-like family. (470 aa)
AHNAK2Protein AHNAK2. (3335 aa)
SRRM4Serine/arginine repetitive matrix protein 4. (611 aa)
DYRK1ADual specificity tyrosine-phosphorylation-regulated kinase 1A isoform X4. (801 aa)
SONProtein SON isoform X1. (2390 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X1. (248 aa)
CLK1Dual specificity protein kinase CLK1 isoform X1; Belongs to the protein kinase superfamily. (485 aa)
PTBP3Polypyrimidine tract-binding protein 3 isoform X1. (555 aa)
RBMXL2LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked-like-2. (272 aa)
RBM20LOW QUALITY PROTEIN: RNA-binding protein 20. (1343 aa)
TIA1Nucleolysin TIA-1 isoform X1. (386 aa)
LOC112407034Survival motor neuron protein. (290 aa)
CEP57L1Centrosomal protein CEP57L1 isoform X1. (476 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (452 aa)
LOC112406138KH domain-containing, RNA-binding, signal transduction-associated protein 2-like. (140 aa)
LOC112405657LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K-like. (462 aa)
FASTKFas-activated serine/threonine kinase. (542 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform X1. (825 aa)
SMU1WD40 repeat-containing protein SMU1 isoform X1. (513 aa)
GRSF1G-rich sequence factor 1. (362 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
HNRNPKHeterogeneous nuclear ribonucleoprotein K isoform X1. (464 aa)
HNRNPLLHeterogeneous nuclear ribonucleoprotein L-like isoform X1. (544 aa)
PIK3R1Phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1. (724 aa)
HMX2Homeobox protein HMX2. (274 aa)
RBM7RNA-binding protein 7. (266 aa)
LOC112404040A-kinase anchor protein 17B-like. (355 aa)
ZPR1Zinc finger protein ZPR1. (459 aa)
LOC112403224A-kinase anchor protein 17B. (548 aa)
LOC112403690RNA-binding motif protein, X chromosome-like. (115 aa)
PTBP2Polypyrimidine tract-binding protein 2 isoform X1. (537 aa)
RBM38RNA-binding protein 38 isoform X1. (173 aa)
RBM10RNA-binding protein 10 isoform X1. (854 aa)
SF1Splicing factor 1 isoform X1. (613 aa)
CLK2Dual specificity protein kinase CLK2 isoform X1; Belongs to the protein kinase superfamily. (500 aa)
AHNAKNeuroblast differentiation-associated protein AHNAK isoform X1. (5558 aa)
LOC112402078RNA-binding protein 4 isoform X1. (363 aa)
CELF1CUGBP Elav-like family member 1 isoform X1. (514 aa)
PRPF19pre-mRNA-processing factor 19. (521 aa)
FXR2Fragile X mental retardation syndrome-related protein 2 isoform X1. (673 aa)
FAM172AProtein FAM172A isoform X1. (416 aa)
WTAPpre-mRNA-splicing regulator WTAP. (319 aa)
RESTRE1-silencing transcription factor isoform X2. (450 aa)
LOC112401079LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K-like. (463 aa)
PCBP4poly(RC)-binding protein 4 isoform X1. (404 aa)
SRSF12Serine/arginine-rich splicing factor 12. (166 aa)
SRSF6Serine/arginine-rich splicing factor 6. (345 aa)
HNRNPH2Heterogeneous nuclear ribonucleoprotein H2. (449 aa)
RBM15BPutative RNA-binding protein 15B. (571 aa)
FAM50AProtein FAM50A isoform X1. (309 aa)
CLK4Dual specificity protein kinase CLK4 isoform X1; Belongs to the protein kinase superfamily. (481 aa)
AFF2AF4/FMR2 family member 2. (1022 aa)
ZBTB7AZinc finger and BTB domain-containing protein 7A. (519 aa)
RAVER1Ribonucleoprotein PTB-binding 1 isoform X1. (754 aa)
FUSRNA-binding protein FUS isoform X1. (514 aa)
LOC112398608RNA-binding protein 12 isoform X1. (928 aa)
RBM39RNA-binding protein 39 isoform X1. (530 aa)
MBNL3Muscleblind-like protein 3 isoform X1. (369 aa)
RBFOX2RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (428 aa)
TRA2ATransformer-2 protein homolog alpha isoform X1. (288 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (559 aa)
SNW1SNW domain-containing protein 1. (536 aa)
LOC112394370Protein FAM50A. (330 aa)
SLC39A5Zinc transporter ZIP5. (541 aa)
RBM5RNA-binding protein 5 isoform X1. (855 aa)
SLC38A2Sodium-coupled neutral amino acid transporter 2. (506 aa)
ZC3H10Zinc finger CCCH domain-containing protein 10 isoform X1. (432 aa)
TMBIM6Bax inhibitor 1; Belongs to the BI1 family. (237 aa)
CELF2LOW QUALITY PROTEIN: CUGBP Elav-like family member 2. (515 aa)
RBM42RNA-binding protein 42 isoform X1. (477 aa)
ESRP2Epithelial splicing regulatory protein 2 isoform X1. (767 aa)
LOC112392028RE1-silencing transcription factor-like. (305 aa)
C1QBPComplement component 1 Q subcomponent-binding protein, mitochondrial. (278 aa)
NCBP1Nuclear cap-binding protein subunit 1. (790 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
NUP98Nuclear pore complex protein Nup98-Nup96 isoform X1. (1817 aa)
RBM22pre-mRNA-splicing factor RBM22 isoform X1. (420 aa)
RBM11Splicing regulator RBM11. (237 aa)
LOC112390558LOW QUALITY PROTEIN: nucleolin-like. (692 aa)
MYOD1Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (319 aa)
RBM15Putative RNA-binding protein 15. (962 aa)
LOC112397519RNA binding motif protein, X-linked-like-1. (498 aa)
RBM23Probable RNA-binding protein 23 isoform X1. (458 aa)
PUF60LOW QUALITY PROTEIN: poly(U)-binding-splicing factor PUF60. (560 aa)
KHDRBS3KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1. (346 aa)
YTHDC1YTH domain-containing protein 1 isoform X1. (737 aa)
CELF5CUGBP Elav-like family member 5 isoform X2. (382 aa)
LOC112396318AF4/FMR2 family member 2-like. (535 aa)
NCLLOW QUALITY PROTEIN: nucleolin. (709 aa)
FMR1Synaptic functional regulator FMR1 isoform X1. (632 aa)
CCNL1cyclin-L1; Belongs to the cyclin family. (527 aa)
CIRBPCold-inducible RNA-binding protein. (172 aa)
PTBP1Polypyrimidine tract-binding protein 1 isoform X1. (557 aa)
DAZAP1DAZ-associated protein 1 isoform X1. (365 aa)
PRR3Proline-rich protein 3 isoform X1. (226 aa)
MBNL2Muscleblind-like protein 2 isoform X1. (379 aa)
LARP7La-related protein 7 isoform X1. (580 aa)
RBM25RNA-binding protein 25. (843 aa)
THRAP3Thyroid hormone receptor-associated protein 3. (958 aa)
ILDR1Immunoglobulin-like domain-containing receptor 1. (549 aa)
PQBP1Polyglutamine-binding protein 1. (265 aa)
MBNL1Muscleblind-like protein 1 isoform X1. (436 aa)
NOVA1RNA-binding protein Nova-1. (385 aa)
PRXPeriaxin. (1335 aa)
AKAP17AA-kinase anchor protein 17A. (385 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa isoform X1. (439 aa)
NOVA2LOW QUALITY PROTEIN: RNA-binding protein Nova-2. (440 aa)
TRA2BTransformer-2 protein homolog beta isoform X1. (288 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
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