STRINGSTRING
ZBTB7A ZBTB7A MYOD1 MYOD1 LOC112390558 LOC112390558 RBM11 RBM11 NUP98 NUP98 RBM8A RBM8A NCBP1 NCBP1 C1QBP C1QBP LOC112392028 LOC112392028 RBM42 RBM42 CELF2 CELF2 ZC3H10 ZC3H10 RBM5 RBM5 SLC39A5 SLC39A5 SNW1 SNW1 NSRP1 NSRP1 TRA2A TRA2A RBM25 RBM25 THRAP3 THRAP3 LARP7 LARP7 MBNL2 MBNL2 PRR3 PRR3 DAZAP1 DAZAP1 PTBP1 PTBP1 CIRBP CIRBP FMR1 FMR1 NCL NCL CELF5 CELF5 YTHDC1 YTHDC1 KHDRBS3 KHDRBS3 PUF60 PUF60 RBM23 RBM23 LOC112397519 LOC112397519 RBM15 RBM15 RBFOX2 RBFOX2 MBNL3 MBNL3 RBM39 RBM39 RAVER1 RAVER1 RBM15B RBM15B SRSF6 SRSF6 SRSF12 SRSF12 PCBP4 PCBP4 LOC112401079 LOC112401079 REST REST WTAP WTAP FAM172A FAM172A FXR2 FXR2 PRPF19 PRPF19 CELF1 CELF1 LOC112402078 LOC112402078 SF1 SF1 RBM10 RBM10 RBM38 RBM38 LOC112403690 LOC112403690 RBM7 RBM7 HMX2 HMX2 HNRNPK HNRNPK SRSF7 SRSF7 SMU1 SMU1 HNRNPU HNRNPU LOC112405657 LOC112405657 LOC112406138 LOC112406138 U2AF2 U2AF2 CEP57L1 CEP57L1 TIA1 TIA1 RBMXL2 RBMXL2 SON SON DYRK1A DYRK1A SRRM4 SRRM4 LOC112409347 LOC112409347 RBFOX1 RBFOX1 RBMX RBMX JMJD6 JMJD6 RBFOX3 RBFOX3 DDX5 DDX5 DDX17 DDX17 EIF4A3 EIF4A3 CELF6 CELF6 CELF3 CELF3 QKI QKI KHDRBS2 KHDRBS2 RBM24 RBM24 RAVER2 RAVER2 LOC112413069 LOC112413069 LOC112413458 LOC112413458 SF3B4 SF3B4 SRSF3 SRSF3 SRSF4 SRSF4 SRRM1 SRRM1 FXR1 FXR1 KHDRBS1 KHDRBS1 TRA2B TRA2B NOVA2 NOVA2 NOVA1 NOVA1 MBNL1 MBNL1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ZBTB7AZinc finger and BTB domain-containing protein 7A. (519 aa)
MYOD1Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (319 aa)
LOC112390558LOW QUALITY PROTEIN: nucleolin-like. (692 aa)
RBM11Splicing regulator RBM11. (237 aa)
NUP98Nuclear pore complex protein Nup98-Nup96 isoform X1. (1817 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
NCBP1Nuclear cap-binding protein subunit 1. (790 aa)
C1QBPComplement component 1 Q subcomponent-binding protein, mitochondrial. (278 aa)
LOC112392028RE1-silencing transcription factor-like. (305 aa)
RBM42RNA-binding protein 42 isoform X1. (477 aa)
CELF2LOW QUALITY PROTEIN: CUGBP Elav-like family member 2. (515 aa)
ZC3H10Zinc finger CCCH domain-containing protein 10 isoform X1. (432 aa)
RBM5RNA-binding protein 5 isoform X1. (855 aa)
SLC39A5Zinc transporter ZIP5. (541 aa)
SNW1SNW domain-containing protein 1. (536 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (559 aa)
TRA2ATransformer-2 protein homolog alpha isoform X1. (288 aa)
RBM25RNA-binding protein 25. (843 aa)
THRAP3Thyroid hormone receptor-associated protein 3. (958 aa)
LARP7La-related protein 7 isoform X1. (580 aa)
MBNL2Muscleblind-like protein 2 isoform X1. (379 aa)
PRR3Proline-rich protein 3 isoform X1. (226 aa)
DAZAP1DAZ-associated protein 1 isoform X1. (365 aa)
PTBP1Polypyrimidine tract-binding protein 1 isoform X1. (557 aa)
CIRBPCold-inducible RNA-binding protein. (172 aa)
FMR1Synaptic functional regulator FMR1 isoform X1. (632 aa)
NCLLOW QUALITY PROTEIN: nucleolin. (709 aa)
CELF5CUGBP Elav-like family member 5 isoform X2. (382 aa)
YTHDC1YTH domain-containing protein 1 isoform X1. (737 aa)
KHDRBS3KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X1. (346 aa)
PUF60LOW QUALITY PROTEIN: poly(U)-binding-splicing factor PUF60. (560 aa)
RBM23Probable RNA-binding protein 23 isoform X1. (458 aa)
LOC112397519RNA binding motif protein, X-linked-like-1. (498 aa)
RBM15Putative RNA-binding protein 15. (962 aa)
RBFOX2RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (428 aa)
MBNL3Muscleblind-like protein 3 isoform X1. (369 aa)
RBM39RNA-binding protein 39 isoform X1. (530 aa)
RAVER1Ribonucleoprotein PTB-binding 1 isoform X1. (754 aa)
RBM15BPutative RNA-binding protein 15B. (571 aa)
SRSF6Serine/arginine-rich splicing factor 6. (345 aa)
SRSF12Serine/arginine-rich splicing factor 12. (166 aa)
PCBP4poly(RC)-binding protein 4 isoform X1. (404 aa)
LOC112401079LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K-like. (463 aa)
RESTRE1-silencing transcription factor isoform X2. (450 aa)
WTAPpre-mRNA-splicing regulator WTAP. (319 aa)
FAM172AProtein FAM172A isoform X1. (416 aa)
FXR2Fragile X mental retardation syndrome-related protein 2 isoform X1. (673 aa)
PRPF19pre-mRNA-processing factor 19. (521 aa)
CELF1CUGBP Elav-like family member 1 isoform X1. (514 aa)
LOC112402078RNA-binding protein 4 isoform X1. (363 aa)
SF1Splicing factor 1 isoform X1. (613 aa)
RBM10RNA-binding protein 10 isoform X1. (854 aa)
RBM38RNA-binding protein 38 isoform X1. (173 aa)
LOC112403690RNA-binding motif protein, X chromosome-like. (115 aa)
RBM7RNA-binding protein 7. (266 aa)
HMX2Homeobox protein HMX2. (274 aa)
HNRNPKHeterogeneous nuclear ribonucleoprotein K isoform X1. (464 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
SMU1WD40 repeat-containing protein SMU1 isoform X1. (513 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform X1. (825 aa)
LOC112405657LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein K-like. (462 aa)
LOC112406138KH domain-containing, RNA-binding, signal transduction-associated protein 2-like. (140 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (452 aa)
CEP57L1Centrosomal protein CEP57L1 isoform X1. (476 aa)
TIA1Nucleolysin TIA-1 isoform X1. (386 aa)
RBMXL2LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked-like-2. (272 aa)
SONProtein SON isoform X1. (2390 aa)
DYRK1ADual specificity tyrosine-phosphorylation-regulated kinase 1A isoform X4. (801 aa)
SRRM4Serine/arginine repetitive matrix protein 4. (611 aa)
LOC112409347Uncharacterized protein LOC112409347. (127 aa)
RBFOX1RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (418 aa)
RBMXRNA-binding motif protein, X chromosome. (391 aa)
JMJD6Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform X1. (431 aa)
RBFOX3RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (373 aa)
DDX5Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (614 aa)
DDX17Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family. (652 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
CELF6CUGBP Elav-like family member 6. (316 aa)
CELF3CUGBP Elav-like family member 3 isoform X1. (466 aa)
QKIProtein quaking isoform X1. (286 aa)
KHDRBS2KH domain-containing, RNA-binding, signal transduction-associated protein 2. (253 aa)
RBM24RNA-binding protein 24. (236 aa)
RAVER2Ribonucleoprotein PTB-binding 2 isoform X1. (619 aa)
LOC112413069annotation not available (303 aa)
LOC112413458CUGBP Elav-like family member 4. (433 aa)
SF3B4Splicing factor 3B subunit 4. (424 aa)
SRSF3Serine/arginine-rich splicing factor 3. (164 aa)
SRSF4Serine/arginine-rich splicing factor 4. (485 aa)
SRRM1Serine/arginine repetitive matrix protein 1 isoform X1. (918 aa)
FXR1Fragile X mental retardation syndrome-related protein 1 isoform X1. (650 aa)
KHDRBS1KH domain-containing, RNA-binding, signal transduction-associated protein 1. (443 aa)
TRA2BTransformer-2 protein homolog beta isoform X1. (288 aa)
NOVA2LOW QUALITY PROTEIN: RNA-binding protein Nova-2. (440 aa)
NOVA1RNA-binding protein Nova-1. (385 aa)
MBNL1Muscleblind-like protein 1 isoform X1. (436 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
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