20 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCL	LOW QUALITY PROTEIN: nucleolin. (709 aa)
	TRA2B	Transformer-2 protein homolog beta isoform X1. (288 aa)
	SF3B4	Splicing factor 3B subunit 4. (424 aa)
	LOC112413458	CUGBP Elav-like family member 4. (433 aa)
	CELF3	CUGBP Elav-like family member 3 isoform X1. (466 aa)
	RBMX	RNA-binding motif protein, X chromosome. (391 aa)
	RBMXL2	LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked-like-2. (272 aa)
	SLC39A5	Zinc transporter ZIP5. (541 aa)
	SNW1	SNW domain-containing protein 1. (536 aa)
	HMX2	Homeobox protein HMX2. (274 aa)
	LOC112403690	RNA-binding motif protein, X chromosome-like. (115 aa)
	PRPF19	pre-mRNA-processing factor 19. (521 aa)
	LOC112397519	RNA binding motif protein, X-linked-like-1. (498 aa)
	CIRBP	Cold-inducible RNA-binding protein. (172 aa)
	NUP98	Nuclear pore complex protein Nup98-Nup96 isoform X1. (1817 aa)
	NCBP1	Nuclear cap-binding protein subunit 1. (790 aa)
	DAZAP1	DAZ-associated protein 1 isoform X1. (365 aa)
	THRAP3	Thyroid hormone receptor-associated protein 3. (958 aa)
	LOC112390558	LOW QUALITY PROTEIN: nucleolin-like. (692 aa)
	TRA2A	Transformer-2 protein homolog alpha isoform X1. (288 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIRBP	DAZAP1	A0A341AZC7	A0A341AYY7	Cold-inducible RNA-binding protein.	DAZ-associated protein 1 isoform X1.	0.454
CIRBP	NCBP1	A0A341AZC7	A0A341AHF3	Cold-inducible RNA-binding protein.	Nuclear cap-binding protein subunit 1.	0.578
CIRBP	PRPF19	A0A341AZC7	A0A341BNF0	Cold-inducible RNA-binding protein.	pre-mRNA-processing factor 19.	0.454
CIRBP	SF3B4	A0A341AZC7	A0A341D3L1	Cold-inducible RNA-binding protein.	Splicing factor 3B subunit 4.	0.510
CIRBP	SNW1	A0A341AZC7	A0A341ASQ0	Cold-inducible RNA-binding protein.	SNW domain-containing protein 1.	0.423
CIRBP	TRA2A	A0A341AZC7	A0A341AUJ2	Cold-inducible RNA-binding protein.	Transformer-2 protein homolog alpha isoform X1.	0.448
CIRBP	TRA2B	A0A341AZC7	A0A341D9D9	Cold-inducible RNA-binding protein.	Transformer-2 protein homolog beta isoform X1.	0.456
DAZAP1	CIRBP	A0A341AYY7	A0A341AZC7	DAZ-associated protein 1 isoform X1.	Cold-inducible RNA-binding protein.	0.454
DAZAP1	TRA2A	A0A341AYY7	A0A341AUJ2	DAZ-associated protein 1 isoform X1.	Transformer-2 protein homolog alpha isoform X1.	0.436
DAZAP1	TRA2B	A0A341AYY7	A0A341D9D9	DAZ-associated protein 1 isoform X1.	Transformer-2 protein homolog beta isoform X1.	0.435
LOC112390558	LOC112397519	A0A341ACK9	A0A341B750	LOW QUALITY PROTEIN: nucleolin-like.	RNA binding motif protein, X-linked-like-1.	0.484
LOC112390558	NCBP1	A0A341ACK9	A0A341AHF3	LOW QUALITY PROTEIN: nucleolin-like.	Nuclear cap-binding protein subunit 1.	0.742
LOC112390558	RBMX	A0A341ACK9	A0A341CMJ2	LOW QUALITY PROTEIN: nucleolin-like.	RNA-binding motif protein, X chromosome.	0.436
LOC112390558	RBMXL2	A0A341ACK9	A0A341CE17	LOW QUALITY PROTEIN: nucleolin-like.	LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked-like-2.	0.488
LOC112390558	TRA2B	A0A341ACK9	A0A341D9D9	LOW QUALITY PROTEIN: nucleolin-like.	Transformer-2 protein homolog beta isoform X1.	0.400
LOC112397519	LOC112390558	A0A341B750	A0A341ACK9	RNA binding motif protein, X-linked-like-1.	LOW QUALITY PROTEIN: nucleolin-like.	0.484
LOC112397519	NCBP1	A0A341B750	A0A341AHF3	RNA binding motif protein, X-linked-like-1.	Nuclear cap-binding protein subunit 1.	0.582
LOC112397519	NCL	A0A341B750	A0A341B0M1	RNA binding motif protein, X-linked-like-1.	LOW QUALITY PROTEIN: nucleolin.	0.486
LOC112397519	PRPF19	A0A341B750	A0A341BNF0	RNA binding motif protein, X-linked-like-1.	pre-mRNA-processing factor 19.	0.488
LOC112397519	SF3B4	A0A341B750	A0A341D3L1	RNA binding motif protein, X-linked-like-1.	Splicing factor 3B subunit 4.	0.470