53 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BTBD11	Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 isoform X1. (1087 aa)
	GDF3	Growth/differentiation factor 3. (364 aa)
	SMAD3	Mothers against decapentaplegic homolog. (376 aa)
	BMP4	Bone morphogenetic protein 4 isoform X1. (420 aa)
	SMAD6	LOW QUALITY PROTEIN: mothers against decapentaplegic homolog 6. (422 aa)
	INHBE	Inhibin beta E chain. (351 aa)
	INHBC	Inhibin beta C chain. (352 aa)
	SMAD1	Mothers against decapentaplegic homolog. (465 aa)
	GDF11	Growth/differentiation factor 11. (263 aa)
	BMP10	Bone morphogenetic protein 10. (423 aa)
	BMP8A	Bone morphogenetic protein 8A. (402 aa)
	TGFB3	Transforming growth factor beta-3. (456 aa)
	GDF10	Bone morphogenetic protein 3; Belongs to the TGF-beta family. (477 aa)
	GDF2	Growth/differentiation factor 2. (431 aa)
	TGFB2	Transforming growth factor beta; Belongs to the TGF-beta family. (442 aa)
	BMP6	Bone morphogenetic protein 6. (309 aa)
	ZMIZ1	Zinc finger MIZ domain-containing protein 1. (1065 aa)
	SLC33A1	Acetyl-coenzyme A transporter 1. (550 aa)
	NCEH1	Neutral cholesterol ester hydrolase 1 isoform X1. (408 aa)
	HNF1A	Hepatocyte nuclear factor 1-alpha isoform X1. (632 aa)
	HIPK2	Homeodomain-interacting protein kinase 2. (1027 aa)
	CITED1	Cbp/p300-interacting transactivator 1. (221 aa)
	GDF5	Growth/differentiation factor 5. (499 aa)
	TBXT	Brachyury protein isoform X1. (435 aa)
	ATOH8	LOW QUALITY PROTEIN: protein atonal homolog 8. (317 aa)
	LOC112400470	Serotransferrin-like; Belongs to the transferrin family. (707 aa)
	HNF4A	Hepatocyte nuclear factor 4-alpha isoform X1. (484 aa)
	NUP93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (827 aa)
	GDF7	Growth/differentiation factor 7. (381 aa)
	RBM14	RNA-binding protein 14 isoform X1. (669 aa)
	VIM	Vimentin; Belongs to the intermediate filament family. (466 aa)
	BMP7	Bone morphogenetic protein 7. (431 aa)
	JADE2	E3 ubiquitin-protein ligase Jade-2 isoform X1. (827 aa)
	SMAD5	Mothers against decapentaplegic homolog. (465 aa)
	LOC112404952	Left-right determination factor 2-like. (217 aa)
	LOC112404954	Left-right determination factor 2-like. (252 aa)
	AFP	Alpha-fetoprotein. (610 aa)
	BMP5	Bone morphogenetic protein 5 isoform X2. (455 aa)
	SMAD9	Mothers against decapentaplegic homolog. (440 aa)
	SUB1	Activated RNA polymerase II transcriptional coactivator p15. (127 aa)
	JUN	LOW QUALITY PROTEIN: transcription factor AP-1; Belongs to the bZIP family. (284 aa)
	GDF6	Growth/differentiation factor 6. (462 aa)
	SMAD7	Mothers against decapentaplegic homolog. (426 aa)
	SMAD2	Mothers against decapentaplegic homolog. (467 aa)
	SMAD4	Mothers against decapentaplegic homolog. (599 aa)
	INHBB	Inhibin beta B chain. (345 aa)
	SKI	Ski oncogene. (669 aa)
	HEXA	Beta-hexosaminidase. (529 aa)
	BMP2	Bone morphogenetic protein 2 isoform X1. (395 aa)
	NODAL	Nodal homolog. (348 aa)
	BMP3	Bone morphogenetic protein 3; Belongs to the TGF-beta family. (475 aa)
	GDF1	Embryonic growth/differentiation factor 1. (203 aa)
	GDF15	Growth/differentiation factor 15. (308 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFP	BMP4	A0A341C7I7	A0A341AL27	Alpha-fetoprotein.	Bone morphogenetic protein 4 isoform X1.	0.525
AFP	GDF1	A0A341C7I7	A0A341D8B8	Alpha-fetoprotein.	Embryonic growth/differentiation factor 1.	0.435
AFP	GDF3	A0A341C7I7	A0A341AF20	Alpha-fetoprotein.	Growth/differentiation factor 3.	0.435
AFP	HNF4A	A0A341C7I7	A0A341BLJ9	Alpha-fetoprotein.	Hepatocyte nuclear factor 4-alpha isoform X1.	0.743
AFP	LOC112400470	A0A341C7I7	A0A341BJQ9	Alpha-fetoprotein.	Serotransferrin-like; Belongs to the transferrin family.	0.553
BMP10	BMP2	A0A341AVG2	A0A341D1S7	Bone morphogenetic protein 10.	Bone morphogenetic protein 2 isoform X1.	0.431
BMP10	BMP4	A0A341AVG2	A0A341AL27	Bone morphogenetic protein 10.	Bone morphogenetic protein 4 isoform X1.	0.641
BMP10	BMP5	A0A341AVG2	A0A341C7T8	Bone morphogenetic protein 10.	Bone morphogenetic protein 5 isoform X2.	0.625
BMP10	BMP7	A0A341AVG2	A0A341BWL0	Bone morphogenetic protein 10.	Bone morphogenetic protein 7.	0.441
BMP10	GDF15	A0A341AVG2	A0A341DBA3	Bone morphogenetic protein 10.	Growth/differentiation factor 15.	0.418
BMP10	GDF2	A0A341AVG2	A0A341AWI8	Bone morphogenetic protein 10.	Growth/differentiation factor 2.	0.953
BMP10	GDF5	A0A341AVG2	A0A341BBD5	Bone morphogenetic protein 10.	Growth/differentiation factor 5.	0.417
BMP10	SMAD2	A0A341AVG2	A0A341CCX0	Bone morphogenetic protein 10.	Mothers against decapentaplegic homolog.	0.432
BMP10	SMAD3	A0A341AVG2	A0A341AJT2	Bone morphogenetic protein 10.	Mothers against decapentaplegic homolog.	0.630
BMP10	SMAD4	A0A341AVG2	A0A341CF47	Bone morphogenetic protein 10.	Mothers against decapentaplegic homolog.	0.533
BMP10	SMAD5	A0A341AVG2	A0A341C0M5	Bone morphogenetic protein 10.	Mothers against decapentaplegic homolog.	0.564
BMP2	BMP10	A0A341D1S7	A0A341AVG2	Bone morphogenetic protein 2 isoform X1.	Bone morphogenetic protein 10.	0.431
BMP2	BMP4	A0A341D1S7	A0A341AL27	Bone morphogenetic protein 2 isoform X1.	Bone morphogenetic protein 4 isoform X1.	0.890
BMP2	BMP5	A0A341D1S7	A0A341C7T8	Bone morphogenetic protein 2 isoform X1.	Bone morphogenetic protein 5 isoform X2.	0.665
BMP2	BMP6	A0A341D1S7	A0A341AY45	Bone morphogenetic protein 2 isoform X1.	Bone morphogenetic protein 6.	0.939