22 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RTF1	RNA polymerase-associated protein RTF1 homolog. (710 aa)
	LOC112391706	Homeobox protein NANOG-like. (225 aa)
	ETV2	LOW QUALITY PROTEIN: ETS translocation variant 2. (374 aa)
	BMP4	Bone morphogenetic protein 4 isoform X1. (420 aa)
	SMAD1	Mothers against decapentaplegic homolog. (465 aa)
	EYA1	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (589 aa)
	SOX17	LOW QUALITY PROTEIN: transcription factor SOX-17. (207 aa)
	TBX6	T-box transcription factor TBX6 isoform X1. (463 aa)
	EOMES	LOW QUALITY PROTEIN: eomesodermin homolog. (703 aa)
	SIX2	Homeobox protein SIX2 isoform X1. (298 aa)
	CTNNB1	Catenin beta-1. (781 aa)
	LOC112406365	LOW QUALITY PROTEIN: homeobox protein NANOG-like. (294 aa)
	HOXA11	Homeobox protein Hox-A11. (318 aa)
	CTR9	RNA polymerase-associated protein CTR9 homolog isoform X1. (1214 aa)
	LOC112407979	Secreted frizzled-related protein 2-like. (105 aa)
	GATA6	Transcription factor GATA-6. (448 aa)
	LOC112407988	Secreted frizzled-related protein 2. (294 aa)
	LEO1	RNA polymerase-associated protein LEO1 isoform X1. (672 aa)
	LOC112411009	RNA polymerase-associated protein LEO1-like. (292 aa)
	WNT3A	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
	NODAL	Nodal homolog. (348 aa)
	PAF1	RNA polymerase II-associated factor 1 homolog isoform X1. (533 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMP4	CTNNB1	A0A341AL27	A0A341C5R9	Bone morphogenetic protein 4 isoform X1.	Catenin beta-1.	0.684
BMP4	EOMES	A0A341AL27	A0A341C2R0	Bone morphogenetic protein 4 isoform X1.	LOW QUALITY PROTEIN: eomesodermin homolog.	0.536
BMP4	EYA1	A0A341AL27	A0A341AZ07	Bone morphogenetic protein 4 isoform X1.	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.	0.450
BMP4	GATA6	A0A341AL27	A0A341CGD3	Bone morphogenetic protein 4 isoform X1.	Transcription factor GATA-6.	0.636
BMP4	LOC112391706	A0A341AL27	A0A341AG94	Bone morphogenetic protein 4 isoform X1.	Homeobox protein NANOG-like.	0.702
BMP4	LOC112406365	A0A341AL27	A0A341C7Y1	Bone morphogenetic protein 4 isoform X1.	LOW QUALITY PROTEIN: homeobox protein NANOG-like.	0.702
BMP4	NODAL	A0A341AL27	A0A341D5U3	Bone morphogenetic protein 4 isoform X1.	Nodal homolog.	0.519
BMP4	SMAD1	A0A341AL27	A0A341ARX3	Bone morphogenetic protein 4 isoform X1.	Mothers against decapentaplegic homolog.	0.776
BMP4	SOX17	A0A341AL27	A0A341B9M3	Bone morphogenetic protein 4 isoform X1.	LOW QUALITY PROTEIN: transcription factor SOX-17.	0.760
BMP4	TBX6	A0A341AL27	A0A341BF73	Bone morphogenetic protein 4 isoform X1.	T-box transcription factor TBX6 isoform X1.	0.591
BMP4	WNT3A	A0A341AL27	A0A341D345	Bone morphogenetic protein 4 isoform X1.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.705
CTNNB1	BMP4	A0A341C5R9	A0A341AL27	Catenin beta-1.	Bone morphogenetic protein 4 isoform X1.	0.684
CTNNB1	EOMES	A0A341C5R9	A0A341C2R0	Catenin beta-1.	LOW QUALITY PROTEIN: eomesodermin homolog.	0.604
CTNNB1	GATA6	A0A341C5R9	A0A341CGD3	Catenin beta-1.	Transcription factor GATA-6.	0.416
CTNNB1	LEO1	A0A341C5R9	A0A341CS15	Catenin beta-1.	RNA polymerase-associated protein LEO1 isoform X1.	0.647
CTNNB1	LOC112391706	A0A341C5R9	A0A341AG94	Catenin beta-1.	Homeobox protein NANOG-like.	0.738
CTNNB1	LOC112406365	A0A341C5R9	A0A341C7Y1	Catenin beta-1.	LOW QUALITY PROTEIN: homeobox protein NANOG-like.	0.738
CTNNB1	LOC112407979	A0A341C5R9	A0A341CF44	Catenin beta-1.	Secreted frizzled-related protein 2-like.	0.593
CTNNB1	LOC112407988	A0A341C5R9	A0A341CH64	Catenin beta-1.	Secreted frizzled-related protein 2.	0.593
CTNNB1	LOC112411009	A0A341C5R9	A0A341CSC9	Catenin beta-1.	RNA polymerase-associated protein LEO1-like.	0.647