STRINGSTRING
TBX5 TBX5 DHX36 DHX36 RBM24 RBM24 SOX9 SOX9 GATA6 GATA6 LOC112408148 LOC112408148 TACSTD2 TACSTD2 NUDT21 NUDT21 MTCH2 MTCH2 LTBP3 LTBP3 FGF2 FGF2 HOXB4 HOXB4 SOX17 SOX17 TCF15 TCF15 PTN PTN TGFB2 TGFB2 SP7 SP7 SOX5 SOX5 SOX6 SOX6 PWP1 PWP1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TBX5T-box transcription factor TBX5. (519 aa)
DHX36ATP-dependent RNA helicase DHX36. (1015 aa)
RBM24RNA-binding protein 24. (236 aa)
SOX9Transcription factor SOX-9. (486 aa)
GATA6Transcription factor GATA-6. (448 aa)
LOC112408148LOW QUALITY PROTEIN: tumor-associated calcium signal transducer 2-like. (329 aa)
TACSTD2Tumor-associated calcium signal transducer 2. (419 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
MTCH2Mitochondrial carrier homolog 2; Belongs to the mitochondrial carrier (TC 2.A.29) family. (303 aa)
LTBP3Latent-transforming growth factor beta-binding protein 3 isoform X1. (1211 aa)
FGF2Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (304 aa)
HOXB4LOW QUALITY PROTEIN: homeobox protein Hox-B4. (282 aa)
SOX17LOW QUALITY PROTEIN: transcription factor SOX-17. (207 aa)
TCF15Transcription factor 15. (229 aa)
PTNPleiotrophin isoform X1. (168 aa)
TGFB2Transforming growth factor beta; Belongs to the TGF-beta family. (442 aa)
SP7Transcription factor Sp7. (431 aa)
SOX5Transcription factor SOX-5 isoform X2. (763 aa)
SOX6Transcription factor SOX-6 isoform X5. (835 aa)
PWP1Periodic tryptophan protein 1 homolog. (500 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
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