STRINGSTRING
DDX39B DDX39B LUZP4 LUZP4 MAGOHB MAGOHB RBM8A RBM8A NCBP1 NCBP1 U2AF1L4 U2AF1L4 DHX38 DHX38 SRSF11 SRSF11 CPSF2 CPSF2 SARNP SARNP CPSF6 CPSF6 WDR33 WDR33 POLDIP3 POLDIP3 CPSF3 CPSF3 MAGOH MAGOH SRSF5 SRSF5 SRSF9 SRSF9 CPSF1 CPSF1 CDC40 CDC40 LOC112397848 LOC112397848 THOC3 THOC3 LOC112397693 LOC112397693 CSTF2T CSTF2T CASC3 CASC3 CPSF4 CPSF4 CSTF2 CSTF2 SRSF6 SRSF6 THOC7 THOC7 FIP1L1 FIP1L1 THOC2 THOC2 CHTOP CHTOP CPSF7 CPSF7 CSTF1 CSTF1 CLP1 CLP1 SLU7 SLU7 UPF3B UPF3B NUDT21 NUDT21 ZC3H11A ZC3H11A NCBP2 NCBP2 LOC112405011 LOC112405011 SREK1 SREK1 CSTF3 CSTF3 SRSF7 SRSF7 LOC112406628 LOC112406628 U2AF2 U2AF2 FYTTD1 FYTTD1 SRSF1 SRSF1 THOC1 THOC1 U2AF1 U2AF1 PAPOLA PAPOLA THOC6 THOC6 RNPS1 RNPS1 CPSF4L CPSF4L ALYREF ALYREF CUNH12orf50 CUNH12orf50 EIF4A3 EIF4A3 PCF11 PCF11 PAPOLB PAPOLB SRSF3 SRSF3 SRSF4 SRSF4 SRRM1 SRRM1 DDX39A DDX39A THOC5 THOC5 SYMPK SYMPK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DDX39BSpliceosome RNA helicase DDX39B. (507 aa)
LUZP4LOW QUALITY PROTEIN: leucine zipper protein 4. (359 aa)
MAGOHBProtein mago nashi homolog 2 isoform X1. (148 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
NCBP1Nuclear cap-binding protein subunit 1. (790 aa)
U2AF1L4Splicing factor U2AF 26 kDa subunit isoform X2. (237 aa)
DHX38pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1227 aa)
SRSF11Serine/arginine-rich splicing factor 11 isoform X1. (489 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
SARNPSAP domain-containing ribonucleoprotein. (210 aa)
CPSF6Cleavage and polyadenylation specificity factor subunit 6 isoform X1. (537 aa)
WDR33pre-mRNA 3' end processing protein WDR33 isoform X10. (1406 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X1. (421 aa)
CPSF3Cleavage and polyadenylation specificity factor subunit 3 isoform X1. (684 aa)
MAGOHProtein mago nashi homolog. (146 aa)
SRSF5Serine/arginine-rich splicing factor 5 isoform X1. (274 aa)
SRSF9Serine/arginine-rich splicing factor 9. (221 aa)
CPSF1LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1. (1244 aa)
CDC40pre-mRNA-processing factor 17 isoform X1. (579 aa)
LOC112397848Polyadenylate-binding protein 2-like. (135 aa)
THOC3THO complex subunit 3. (351 aa)
LOC112397693RNA-binding protein with serine-rich domain 1-like. (358 aa)
CSTF2TCleavage stimulation factor subunit 2 tau variant. (626 aa)
CASC3Protein CASC3. (697 aa)
CPSF4Cleavage and polyadenylation specificity factor subunit 4 isoform X1. (323 aa)
CSTF2Cleavage stimulation factor subunit 2 isoform X1. (577 aa)
SRSF6Serine/arginine-rich splicing factor 6. (345 aa)
THOC7THO complex subunit 7 homolog. (204 aa)
FIP1L1pre-mRNA 3'-end-processing factor FIP1 isoform X1. (604 aa)
THOC2THO complex subunit 2 isoform X1. (1642 aa)
CHTOPChromatin target of PRMT1 protein isoform X1. (249 aa)
CPSF7Cleavage and polyadenylation specificity factor subunit 7 isoform X1. (471 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (444 aa)
SLU7pre-mRNA-splicing factor SLU7 isoform X1. (603 aa)
UPF3BRegulator of nonsense transcripts 3B isoform X1. (490 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A isoform X1. (822 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
LOC112405011LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like. (333 aa)
SREK1Splicing regulatory glutamine/lysine-rich protein 1 isoform X1. (629 aa)
CSTF3Cleavage stimulation factor subunit 3 isoform X1. (717 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X1. (238 aa)
LOC112406628LOW QUALITY PROTEIN: polyadenylate-binding protein 2-like. (273 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (452 aa)
FYTTD1UAP56-interacting factor. (317 aa)
SRSF1Serine/arginine-rich splicing factor 1 isoform X1. (248 aa)
THOC1THO complex subunit 1. (657 aa)
U2AF1Splicing factor U2AF 35 kDa subunit. (164 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (744 aa)
THOC6THO complex subunit 6 homolog isoform X1. (341 aa)
RNPS1RNA-binding protein with serine-rich domain 1 isoform X1. (305 aa)
CPSF4LPutative cleavage and polyadenylation specificity factor subunit 4-like protein. (176 aa)
ALYREFTHO complex subunit 4. (187 aa)
CUNH12orf50Uncharacterized protein C12orf50 homolog. (375 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
PCF11pre-mRNA cleavage complex 2 protein Pcf11 isoform X1. (1686 aa)
PAPOLBPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (634 aa)
SRSF3Serine/arginine-rich splicing factor 3. (164 aa)
SRSF4Serine/arginine-rich splicing factor 4. (485 aa)
SRRM1Serine/arginine repetitive matrix protein 1 isoform X1. (918 aa)
DDX39AATP-dependent RNA helicase DDX39A. (427 aa)
THOC5THO complex subunit 5 homolog. (681 aa)
SYMPKSymplekin. (1275 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
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