STRINGSTRING
LOC112404113 LOC112404113 CXXC5 CXXC5 LOC112404139 LOC112404139 LOC112404164 LOC112404164 LOC112412577 LOC112412577 LOC112404118 LOC112404118 GTF2A1L GTF2A1L CUNH11orf88 CUNH11orf88 LOC112405915 LOC112405915 LOC112406059 LOC112406059 KANK3 KANK3 GTF2F1 GTF2F1 KANK2 KANK2 NCOA3 NCOA3 KDM4B KDM4B CARM1 CARM1 LOC112399539 LOC112399539 POLR2J POLR2J UPK3BL1 UPK3BL1 TBP TBP CITED1 CITED1 LOC112398930 LOC112398930 POU2F1 POU2F1 KAT2B KAT2B CXXC4 CXXC4 MED1 MED1 HDAC1 HDAC1 TRPS1 TRPS1 EBAG9 EBAG9 POLR2E POLR2E KANK4 KANK4 ZC3H12B ZC3H12B NCOA2 NCOA2 ZC3H12A ZC3H12A ZC3H12D ZC3H12D POLR2C POLR2C ESR1 ESR1 LOC112401405 LOC112401405 TLE3 TLE3 POLR2G POLR2G POLR2A POLR2A POLR2B POLR2B KAT5 KAT5 POLR2L POLR2L NR5A2 NR5A2 LOC112403184 LOC112403184 ZNF217 ZNF217 LOC112403296 LOC112403296 LOC112404103 LOC112404103 LOC112404117 LOC112404117 LOC112404162 LOC112404162 LOC112404166 LOC112404166 LOC112404156 LOC112404156 LOC112404163 LOC112404163 LOC112413776 LOC112413776 LOC112413751 LOC112413751 LOC112413774 LOC112413774 LOC112413772 LOC112413772 LOC112404102 LOC112404102 LOC112404122 LOC112404122 LOC112404165 LOC112404165 LOC112412585 LOC112412585 NCOA1 NCOA1 LOC112412584 LOC112412584 LOC112412606 LOC112412606 POLR2D POLR2D RIMS3 RIMS3 FOS FOS NRIP1 NRIP1 EP300 EP300 GREB1 GREB1 CCNT1 CCNT1 TNRC6B TNRC6B GTF2A1 GTF2A1 SP1 SP1 PTGES3 PTGES3 TBPL2 TBPL2 LOC112393744 LOC112393744 POLR2I POLR2I GTF2A2 GTF2A2 LOC112392531 LOC112392531 LOC112391908 LOC112391908 USF2 USF2 FKBP4 FKBP4 KANK1 KANK1 PRMT8 PRMT8 GATA3 GATA3 LOC112404101 LOC112404101 ZC3H12C ZC3H12C GTF2F2 GTF2F2 POLR2K POLR2K USF1 USF1 GREB1L GREB1L RUNX1 RUNX1 TBPL1 TBPL1 LOC112408652 LOC112408652 YY1 YY1 CREBBP CREBBP MYB MYB ZFP42 ZFP42 HSP90AA1 HSP90AA1 PGR PGR POLR2F POLR2F DDX5 DDX5 FOXA1 FOXA1 CDK9 CDK9 ERBB4 ERBB4 LOC112412579 LOC112412579 LOC112412583 LOC112412583 LOC112412589 LOC112412589 PRMT1 PRMT1 FOSB FOSB JUND JUND POLR2H POLR2H KDM1A KDM1A CHD1 CHD1 LOC112413773 LOC112413773 HSP90AB1 HSP90AB1 LOC112413771 LOC112413771
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC112404113Histone H2B; Belongs to the histone H2B family. (126 aa)
CXXC5CXXC-type zinc finger protein 5. (319 aa)
LOC112404139Histone H2B; Belongs to the histone H2B family. (127 aa)
LOC112404164Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112412577Histone H3; Belongs to the histone H3 family. (136 aa)
LOC112404118Uncharacterized protein LOC112404118. (343 aa)
GTF2A1LTFIIA-alpha and beta-like factor. (477 aa)
CUNH11orf88UPF0722 protein C11orf88 homolog. (168 aa)
LOC112405915Histone H2B; Belongs to the histone H2B family. (122 aa)
LOC112406059Histone H2A; Belongs to the histone H2A family. (109 aa)
KANK3KN motif and ankyrin repeat domain-containing protein 3 isoform X1. (367 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (517 aa)
KANK2KN motif and ankyrin repeat domain-containing protein 2 isoform X1. (858 aa)
NCOA3Nuclear receptor coactivator. (1400 aa)
KDM4BLysine-specific demethylase 4B isoform X1. (1121 aa)
CARM1Histone-arginine methyltransferase CARM1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (661 aa)
LOC112399539Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (107 aa)
POLR2JDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
UPK3BL1LOW QUALITY PROTEIN: uroplakin-3b-like protein 1. (253 aa)
TBPTATA-box-binding protein. (317 aa)
CITED1Cbp/p300-interacting transactivator 1. (221 aa)
LOC112398930Histone H2A; Belongs to the histone H2A family. (128 aa)
POU2F1POU domain protein. (757 aa)
KAT2BHistone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (823 aa)
CXXC4CXXC-type zinc finger protein 4. (253 aa)
MED1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1579 aa)
HDAC1Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (419 aa)
TRPS1Zinc finger transcription factor Trps1. (1293 aa)
EBAG9Receptor-binding cancer antigen expressed on SiSo cells isoform X1. (336 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
KANK4KN motif and ankyrin repeat domain-containing protein 4. (1003 aa)
ZC3H12BProbable ribonuclease ZC3H12B. (694 aa)
NCOA2Nuclear receptor coactivator. (1464 aa)
ZC3H12AEndoribonuclease ZC3H12A. (583 aa)
ZC3H12DProbable ribonuclease ZC3H12D. (264 aa)
POLR2CDNA-directed RNA polymerase II subunit RPB3. (275 aa)
ESR1Estrogen receptor. (604 aa)
LOC112401405Histone H2B type 2-E-like; Belongs to the histone H2B family. (89 aa)
TLE3Transducin-like enhancer protein 3 isoform X1. (772 aa)
POLR2GDNA-directed RNA polymerase II subunit RPB7. (172 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
KAT5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (546 aa)
POLR2LDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
NR5A2Nuclear receptor subfamily 5 group A member 2. (495 aa)
LOC112403184Peptidylprolyl isomerase. (647 aa)
ZNF217Zinc finger protein 217. (1103 aa)
LOC112403296Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112404103Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112404117LOW QUALITY PROTEIN: uncharacterized protein LOC112404117; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (469 aa)
LOC112404162Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112404166Histone H2B type 1-L-like; Belongs to the histone H2B family. (125 aa)
LOC112404156Histone H2A; Belongs to the histone H2A family. (130 aa)
LOC112404163Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112413776Histone H2B; Belongs to the histone H2B family. (67 aa)
LOC112413751Histone H2A; Belongs to the histone H2A family. (129 aa)
LOC112413774Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112413772Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112404102Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112404122Histone H2B; Belongs to the histone H2B family. (127 aa)
LOC112404165Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112412585Histone H2B; Belongs to the histone H2B family. (126 aa)
NCOA1Nuclear receptor coactivator. (1441 aa)
LOC112412584Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112412606Histone H2B; Belongs to the histone H2B family. (147 aa)
POLR2DDNA-directed RNA polymerase II subunit RPB4 isoform X1. (142 aa)
RIMS3Regulating synaptic membrane exocytosis protein 3 isoform X1. (444 aa)
FOSProto-oncogene c-Fos. (380 aa)
NRIP1Nuclear receptor-interacting protein 1. (1156 aa)
EP300Histone acetyltransferase p300. (2399 aa)
GREB1Protein GREB1. (1946 aa)
CCNT1cyclin-T1 isoform X1; Belongs to the cyclin family. (727 aa)
TNRC6BTrinucleotide repeat-containing gene 6B protein isoform X4. (1874 aa)
GTF2A1Transcription initiation factor IIA subunit 1. (336 aa)
SP1Transcription factor Sp1. (780 aa)
PTGES3Prostaglandin E synthase 3 isoform X1. (160 aa)
TBPL2TATA box-binding protein-like protein 2. (394 aa)
LOC112393744Histone H2A; Belongs to the histone H2A family. (128 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
GTF2A2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
LOC112392531Histone-arginine methyltransferase CARM1-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (461 aa)
LOC112391908Histone H2A; Belongs to the histone H2A family. (129 aa)
USF2Upstream stimulatory factor 2. (360 aa)
FKBP4Peptidylprolyl isomerase. (458 aa)
KANK1KN motif and ankyrin repeat domain-containing protein 1 isoform X1. (1351 aa)
PRMT8Protein arginine N-methyltransferase 8 isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (394 aa)
GATA3Trans-acting T-cell-specific transcription factor GATA-3 isoform X1. (444 aa)
LOC112404101Histone H2B; Belongs to the histone H2B family. (126 aa)
ZC3H12CProbable ribonuclease ZC3H12C. (908 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
POLR2KDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
USF1Upstream stimulatory factor 1 isoform X1. (310 aa)
GREB1LLOW QUALITY PROTEIN: GREB1-like protein. (1833 aa)
RUNX1Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX. (480 aa)
TBPL1TATA box-binding protein-like protein 1. (186 aa)
LOC112408652Trefoil factor 3-like. (80 aa)
YY1Transcriptional repressor protein YY1. (412 aa)
CREBBPCREB-binding protein. (2443 aa)
MYBTranscriptional activator Myb isoform X4. (761 aa)
ZFP42Zinc finger protein 42 homolog. (300 aa)
HSP90AA1Heat shock protein HSP 90-alpha. (733 aa)
PGRProgesterone receptor. (888 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1. (143 aa)
DDX5Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (614 aa)
FOXA1Hepatocyte nuclear factor 3-alpha. (466 aa)
CDK9Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (372 aa)
ERBB4Receptor protein-tyrosine kinase. (1308 aa)
LOC112412579Histone H2A; Belongs to the histone H2A family. (130 aa)
LOC112412583Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC112412589Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
PRMT1Protein arginine N-methyltransferase 1 isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (371 aa)
FOSBProtein fosB isoform X1. (341 aa)
JUNDTranscription factor jun-D. (345 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
KDM1ALysine-specific histone demethylase 1A. (730 aa)
CHD1chromodomain-helicase-DNA-binding protein 1 isoform X1. (1797 aa)
LOC112413773Histone H2B; Belongs to the histone H2B family. (126 aa)
HSP90AB1Heat shock protein HSP 90-beta. (724 aa)
LOC112413771Histone H2A; Belongs to the histone H2A family. (130 aa)
Your Current Organism:
Neophocaena asiaeorientalis
NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise
Server load: low (14%) [HD]