(31 nodes) Circadian rhythm network (Neophocaena asiaeorientalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BTRC	F-box/WD repeat-containing protein 1A isoform X1. (605 aa)
	PRKAB2	5'-AMP-activated protein kinase subunit beta-2. (272 aa)
	PRKAG3	5'-AMP-activated protein kinase subunit gamma-3. (464 aa)
	RORC	Nuclear receptor ROR-gamma isoform X1. (544 aa)
	LOC112410850	Casein kinase I isoform X1; Belongs to the protein kinase superfamily. (416 aa)
	CSNK1D	Casein kinase I isoform X4; Belongs to the protein kinase superfamily. (428 aa)
	PRKAB1	5'-AMP-activated protein kinase subunit beta-1. (270 aa)
	ARNTL	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1. (631 aa)
	PRKAA2	Non-specific serine/threonine protein kinase. (462 aa)
	LOC112406589	LOW QUALITY PROTEIN: S-phase kinase-associated protein 1-like; Belongs to the SKP1 family. (163 aa)
	PRKAA1	Non-specific serine/threonine protein kinase. (559 aa)
	PRKAG2	5'-AMP-activated protein kinase subunit gamma-2 isoform X1. (566 aa)
	FBXL3	F-box/LRR-repeat protein 3. (429 aa)
	MYCBP2	E3 ubiquitin-protein ligase MYCBP2 isoform X1. (4730 aa)
	FBXW11	F-box/WD repeat-containing protein 11 isoform X1. (577 aa)
	PER2	Period circadian protein homolog 2 isoform X1. (1294 aa)
	PER3	Period circadian protein homolog 3 isoform X1. (1151 aa)
	CRY2	Cryptochrome-2 isoform X1. (638 aa)
	PER1	Period circadian protein homolog 1. (1211 aa)
	CLOCK	Circadian locomoter output cycles protein kaput. (848 aa)
	BHLHE40	Class E basic helix-loop-helix protein 40. (412 aa)
	NPAS2	Neuronal PAS domain-containing protein 2. (806 aa)
	CUL1	Cullin-1; Belongs to the cullin family. (776 aa)
	NR1D1	LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group D member 1. (595 aa)
	RORB	Nuclear receptor ROR-beta. (459 aa)
	RBX1	E3 ubiquitin-protein ligase RBX1 isoform X2. (108 aa)
	CREB1	Cyclic AMP-responsive element-binding protein 1 isoform X1. (341 aa)
	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1 isoform X1. (333 aa)
	RORA	Nuclear receptor ROR-alpha. (386 aa)
	BHLHE41	Class E basic helix-loop-helix protein 41. (371 aa)
	CRY1	Cryptochrome-1 isoform X1. (587 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL	BHLHE40	A0A341CFT2	A0A341BJ50	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Class E basic helix-loop-helix protein 40.	0.581
ARNTL	BHLHE41	A0A341CFT2	A0A341AHX3	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Class E basic helix-loop-helix protein 41.	0.609
ARNTL	BTRC	A0A341CFT2	A0A341AMB0	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	F-box/WD repeat-containing protein 1A isoform X1.	0.667
ARNTL	CLOCK	A0A341CFT2	A0A341BL34	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Circadian locomoter output cycles protein kaput.	0.994
ARNTL	CRY1	A0A341CFT2	A0A341ADH6	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Cryptochrome-1 isoform X1.	0.998
ARNTL	CRY2	A0A341CFT2	A0A341BR37	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Cryptochrome-2 isoform X1.	0.997
ARNTL	CSNK1D	A0A341CFT2	A0A341CPP2	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Casein kinase I isoform X4; Belongs to the protein kinase superfamily.	0.962
ARNTL	FBXL3	A0A341CFT2	A0A341C5C4	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	F-box/LRR-repeat protein 3.	0.590
ARNTL	FBXW11	A0A341CFT2	A0A341C3Q0	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	F-box/WD repeat-containing protein 11 isoform X1.	0.491
ARNTL	LOC112410850	A0A341CFT2	A0A341CRT8	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Casein kinase I isoform X1; Belongs to the protein kinase superfamily.	0.966
ARNTL	NPAS2	A0A341CFT2	A0A341BAL1	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Neuronal PAS domain-containing protein 2.	0.988
ARNTL	NR1D1	A0A341CFT2	A0A341B7G2	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group D member 1.	0.736
ARNTL	PER1	A0A341CFT2	A0A341BN61	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Period circadian protein homolog 1.	0.937
ARNTL	PER2	A0A341CFT2	A0A341C210	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Period circadian protein homolog 2 isoform X1.	0.987
ARNTL	PER3	A0A341CFT2	A0A341BVI8	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Period circadian protein homolog 3 isoform X1.	0.943
ARNTL	RORA	A0A341CFT2	A0A341AP29	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Nuclear receptor ROR-alpha.	0.721
ARNTL	RORB	A0A341CFT2	A0A341AW94	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Nuclear receptor ROR-beta.	0.651
ARNTL	RORC	A0A341CFT2	A0A341CVB1	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	Nuclear receptor ROR-gamma isoform X1.	0.609
BHLHE40	ARNTL	A0A341BJ50	A0A341CFT2	Class E basic helix-loop-helix protein 40.	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1.	0.581
BHLHE40	BHLHE41	A0A341BJ50	A0A341AHX3	Class E basic helix-loop-helix protein 40.	Class E basic helix-loop-helix protein 41.	0.915