(5 nodes) Ligand-gated channel activity, and Amino acid ABC transporter, permease protein, 3-TM domain network (Turicibacter sp. H121)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMC09646.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AMC07620.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	AMC09231.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AMC09232.1	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	AMC09233.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)

Your Current Organism:

Turicibacter sp. H121

NCBI taxonomy Id: 1712675
Other names: T. sp. H121

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMC07620.1	AMC09232.1	AT726_00510	AT726_10195	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AMC07620.1	AMC09233.1	AT726_00510	AT726_10200	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AMC07620.1	AMC09646.1	AT726_00510	AT726_00505	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AMC09231.1	AMC09232.1	AT726_10190	AT726_10195	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AMC09231.1	AMC09233.1	AT726_10190	AT726_10200	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AMC09231.1	AMC09646.1	AT726_10190	AT726_00505	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AMC09232.1	AMC07620.1	AT726_10195	AT726_00510	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AMC09232.1	AMC09231.1	AT726_10195	AT726_10190	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AMC09232.1	AMC09233.1	AT726_10195	AT726_10200	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AMC09232.1	AMC09646.1	AT726_10195	AT726_00505	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AMC09233.1	AMC07620.1	AT726_10200	AT726_00510	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AMC09233.1	AMC09231.1	AT726_10200	AT726_10190	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AMC09233.1	AMC09232.1	AT726_10200	AT726_10195	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AMC09233.1	AMC09646.1	AT726_10200	AT726_00505	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AMC09646.1	AMC07620.1	AT726_00505	AT726_00510	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AMC09646.1	AMC09231.1	AT726_00505	AT726_10190	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AMC09646.1	AMC09232.1	AT726_00505	AT726_10195	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AMC09646.1	AMC09233.1	AT726_00505	AT726_10200	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949