STRINGSTRING
rmlB rmlB gmd gmd fabZ fabZ fbaB fbaB ispF ispF CUQ64982.1 CUQ64982.1 CUQ65034.1 CUQ65034.1 psd psd hisF hisF hisH hisH hisB hisB CUQ65113.1 CUQ65113.1 CUQ65116.1 CUQ65116.1 CUQ65117.1 CUQ65117.1 CUQ65118.1 CUQ65118.1 CUQ65119.1 CUQ65119.1 CUQ65178.1 CUQ65178.1 CUQ65184.1 CUQ65184.1 acnA acnA mutM mutM comD comD CUQ65295.1 CUQ65295.1 CUQ65300.1 CUQ65300.1 CUQ65316.1 CUQ65316.1 CUQ65391.1 CUQ65391.1 purK purK pdaD pdaD CUQ65507.1 CUQ65507.1 CUQ65655.1 CUQ65655.1 CUQ65682.1 CUQ65682.1 thrC thrC nnr nnr leuC leuC leuD leuD cah cah prpB prpB prpD prpD paaF paaF CUQ65915.1 CUQ65915.1 pts pts CUQ66101.1 CUQ66101.1 phr phr CUQ66151.1 CUQ66151.1 CUQ66175.1 CUQ66175.1 CUQ66183.1 CUQ66183.1 CUQ66194.1 CUQ66194.1 tal tal dapA dapA lysA lysA argH argH aroF aroF trpE trpE pyrF pyrF CUQ66415.1 CUQ66415.1 CUQ66589.1 CUQ66589.1 nth nth rlpA rlpA CUQ66681.1 CUQ66681.1 CUQ66683.1 CUQ66683.1 aroB aroB purB purB aroC aroC CUQ66838.1 CUQ66838.1 CUQ66843.1 CUQ66843.1 thiC thiC CUQ66903.1 CUQ66903.1 CUQ66968.1 CUQ66968.1 CUQ66973.1 CUQ66973.1 ltaA ltaA rlpA-2 rlpA-2 trpE-2 trpE-2 trpC trpC trpB trpB trpA trpA CUQ67167.1 CUQ67167.1 fumC fumC pycB pycB hemE hemE hemH hemH panD panD eno eno hemD hemD hemB hemB mltG mltG deoC deoC cobD cobD ilvD ilvD aroQ aroQ dfp dfp nth-2 nth-2 moaA moaA moaC moaC CUQ67859.1 CUQ67859.1 thrC-2 thrC-2 CUQ68025.1 CUQ68025.1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
rmlBdTDP-glucose 4,6 dehydratase, NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (384 aa)
gmdGDP-D-mannose dehydratase, NAD(P)-binding; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (341 aa)
fabZ(3R)-hydroxymyristol acyl carrier protein dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. (153 aa)
fbaBFructose-bisphosphate aldolase class I; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (307 aa)
ispF2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). (157 aa)
CUQ64982.1Homologs of previously reported genes of unknown function. (134 aa)
CUQ65034.1Putative PBS lyase HEAT domain protein repeat-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (374 aa)
psdPhosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). (239 aa)
hisFImidazole glycerol phosphate synthase, catalytic subunit with HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (260 aa)
hisHImidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (203 aa)
hisBImidazoleglycerol-phosphate dehydratase. (202 aa)
CUQ65113.1Homologs of previously reported genes of unknown function. (453 aa)
CUQ65116.1Homologs of previously reported genes of unknown function. (374 aa)
CUQ65117.1Homologs of previously reported genes of unknown function. (369 aa)
CUQ65118.1Homologs of previously reported genes of unknown function. (262 aa)
CUQ65119.1Homologs of previously reported genes of unknown function. (236 aa)
CUQ65178.1Homologs of previously reported genes of unknown function. (151 aa)
CUQ65184.1Protein of unknown function; No homology to any previously reported sequences. (123 aa)
acnAAconitate hydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (748 aa)
mutMDNA-formamidopyrimidine glycosylase and DNA-(Apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (289 aa)
comDSulfopyruvate decarboxylase, alpha subunit. (165 aa)
CUQ65295.1Homologs of previously reported genes of unknown function. (562 aa)
CUQ65300.1Homologs of previously reported genes of unknown function. (158 aa)
CUQ65316.1Homologs of previously reported genes of unknown function. (278 aa)
CUQ65391.1Homologs of previously reported genes of unknown function. (564 aa)
purKPhosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR). (397 aa)
pdaDPutative pyruvoyl-dependent arginine decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (189 aa)
CUQ65507.1Putative 6-pyruvoyl-tetrahydropterin synthase (Modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (250 aa)
CUQ65655.1D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase. (827 aa)
CUQ65682.1Putative phosphoketolase 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (796 aa)
thrCThreonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. (354 aa)
nnrADP-dependent (S)-NAD(P)H-hydrate dehydratase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to all [...] (536 aa)
leuC3-isopropylmalate dehydratase (isomerase), subunit with LeuD; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (467 aa)
leuD3-isopropylmalate isomerase subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (206 aa)
cahCarbonic anhydrase (Carbonate dehydratase); Function of strongly homologous gene; enzyme. (283 aa)
prpB2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. (307 aa)
prpD2-methylcitrate dehydratase. (479 aa)
paaFenoyl-CoA hydratase-isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
CUQ65915.1Putative Enoyl-CoA hydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (267 aa)
pts6-carboxy-5,6,7,8-tetrahydropterin synthase. (131 aa)
CUQ66101.1Homologs of previously reported genes of unknown function. (177 aa)
phrDeoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (482 aa)
CUQ66151.1Homologs of previously reported genes of unknown function. (362 aa)
CUQ66175.1Homologs of previously reported genes of unknown function; Belongs to the LarC family. (450 aa)
CUQ66183.1Homologs of previously reported genes of unknown function. (219 aa)
CUQ66194.1Homologs of previously reported genes of unknown function. (386 aa)
talPutative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (215 aa)
dapA4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (290 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (420 aa)
argHArgininosuccinate lyase. (470 aa)
aroFPhospho-2-dehydro-3-deoxyheptonate aldolase. (337 aa)
trpEAnthranilate synthase component 1. (532 aa)
pyrFOrotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. (237 aa)
CUQ66415.1Putative pterin-4-alpha-carbinolamine dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (115 aa)
CUQ66589.1Homologs of previously reported genes of unknown function. (140 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (219 aa)
rlpAConserved protein of unknown function; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (235 aa)
CUQ66681.1Homologs of previously reported genes of unknown function. (288 aa)
CUQ66683.1Homologs of previously reported genes of unknown function. (467 aa)
aroB3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). (384 aa)
purBAdenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (467 aa)
aroCChorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (387 aa)
CUQ66838.1Cobalamin (Vitamin B12) biosynthesis CbiX protein. (310 aa)
CUQ66843.1Homologs of previously reported genes of unknown function. (562 aa)
thiCThiamin (pyrimidine moiety) biosynthesis protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. (642 aa)
CUQ66903.1Putative Amidohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (330 aa)
CUQ66968.1Homologs of previously reported genes of unknown function. (163 aa)
CUQ66973.1Putative Dihydroneopterin aldolase and SAM-dependent methyltransferase (Modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (303 aa)
ltaAL-allo-threonine aldolase. (343 aa)
rlpA-2Putative lipoprotein, RlpA-like; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (225 aa)
trpE-2Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] (498 aa)
trpCIndole-3-glycerol phosphate synthase; Belongs to the TrpC family. (275 aa)
trpBTryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (398 aa)
trpATryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (294 aa)
CUQ67167.1Putative Pyruvate decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (551 aa)
fumCFumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (479 aa)
pycBPyruvate carboxylase, subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (649 aa)
hemEUroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (344 aa)
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (316 aa)
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (121 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (428 aa)
hemDPorphyrin biosynthesis protein HemD. (526 aa)
hemBPorphobilinogen synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ALAD family. (323 aa)
mltGConserved protein of unknown function; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (337 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (223 aa)
cobDCobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (320 aa)
ilvDDihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (557 aa)
aroQ3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (158 aa)
dfpFused 4'-phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (415 aa)
nth-2Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (217 aa)
moaACyclic pyranopterin monophosphate synthase 3; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (359 aa)
moaCMolybdopterin biosynthesis, protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family. (170 aa)
CUQ67859.1Putative Precorrin-2 dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (217 aa)
thrC-2Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. (416 aa)
CUQ68025.1Homologs of previously reported genes of unknown function. (275 aa)
Your Current Organism:
Nitrospira inopinata
NCBI taxonomy Id: 1715989
Other names: C. Nitrospira inopinata, Candidatus Nitrospira inopinata, Nitrospira sp. ENR4
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