(5 nodes) Carotenoid biosynthesis network (Streptomyces sp. CdTB01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALV32158.1	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	ALV37854.1	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	ALV37855.1	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	ALV37857.1	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	ALV37859.1	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)

Your Current Organism:

Streptomyces sp. CdTB01

NCBI taxonomy Id: 1725411
Other names: S. sp. CdTB01

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV32158.1	ALV37854.1	AS200_09005	AS200_41675	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
ALV32158.1	ALV37855.1	AS200_09005	AS200_41680	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
ALV32158.1	ALV37857.1	AS200_09005	AS200_41695	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ALV32158.1	ALV37859.1	AS200_09005	AS200_41705	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
ALV37854.1	ALV32158.1	AS200_41675	AS200_09005	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
ALV37854.1	ALV37855.1	AS200_41675	AS200_41680	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ALV37854.1	ALV37857.1	AS200_41675	AS200_41695	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
ALV37854.1	ALV37859.1	AS200_41675	AS200_41705	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
ALV37855.1	ALV32158.1	AS200_41680	AS200_09005	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
ALV37855.1	ALV37854.1	AS200_41680	AS200_41675	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ALV37855.1	ALV37857.1	AS200_41680	AS200_41695	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALV37855.1	ALV37859.1	AS200_41680	AS200_41705	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
ALV37857.1	ALV32158.1	AS200_41695	AS200_09005	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ALV37857.1	ALV37854.1	AS200_41695	AS200_41675	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
ALV37857.1	ALV37855.1	AS200_41695	AS200_41680	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALV37857.1	ALV37859.1	AS200_41695	AS200_41705	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ALV37859.1	ALV32158.1	AS200_41705	AS200_09005	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
ALV37859.1	ALV37854.1	AS200_41705	AS200_41675	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
ALV37859.1	ALV37855.1	AS200_41705	AS200_41680	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
ALV37859.1	ALV37857.1	AS200_41705	AS200_41695	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996