STRINGSTRING
ALL08695.1 ALL08695.1 ALL04088.1 ALL04088.1 ALL04366.1 ALL04366.1 ALL04488.1 ALL04488.1 ALL04532.1 ALL04532.1 dapB dapB ALL04740.1 ALL04740.1 ALL04777.1 ALL04777.1 ALL04912.1 ALL04912.1 ALL05044.1 ALL05044.1 ALL05045.1 ALL05045.1 ALL05342.1 ALL05342.1 ALL05767.1 ALL05767.1 ALL06513.1 ALL06513.1 ALL06591.1 ALL06591.1 ALL06928.1 ALL06928.1 ALL07120.1 ALL07120.1 ALL07263.1 ALL07263.1 fabV fabV pyrD pyrD ALL07867.1 ALL07867.1 ALL08060.1 ALL08060.1 ALL08970.1 ALL08970.1 ALL08448.1 ALL08448.1 ALL08521.1 ALL08521.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALL08695.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
ALL04088.1Nitrogen fixation protein NifR; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (335 aa)
ALL04366.1Vi polysaccharide biosynthesis protein VipA/TviB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (433 aa)
ALL04488.1uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
ALL04532.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
dapB4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (246 aa)
ALL04740.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
ALL04777.1Protoporphyrinogen IX oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
ALL04912.1Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
ALL05044.1uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family. (262 aa)
ALL05045.1Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family. (553 aa)
ALL05342.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
ALL05767.1UDP-N-acetyl-D-galactosamine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (430 aa)
ALL06513.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
ALL06591.1Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
ALL06928.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
ALL07120.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
ALL07263.1Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (452 aa)
fabVtrans-2-enoyl-CoA reductase; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. (396 aa)
pyrDDihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (342 aa)
ALL07867.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
ALL08060.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
ALL08970.1Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (349 aa)
ALL08448.1Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
ALL08521.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
Your Current Organism:
Pedobacter sp. PACM27299
NCBI taxonomy Id: 1727164
Other names: P. sp. PACM 27299, Pedobacter sp. PACM 27299
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