5 items (Pedobacter sp. PACM27299) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALL04245.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	ALL04285.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	ALL04914.1	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	ALL04949.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	ALL08446.1	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)

Your Current Organism:

Pedobacter sp. PACM27299

NCBI taxonomy Id: 1727164
Other names: P. sp. PACM 27299, Pedobacter sp. PACM 27299

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALL04245.1	ALL04285.1	AQ505_01285	AQ505_01515	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ALL04285.1	ALL04245.1	AQ505_01515	AQ505_01285	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ALL04285.1	ALL04914.1	AQ505_01515	AQ505_05065	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
ALL04285.1	ALL04949.1	AQ505_01515	AQ505_05245	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ALL04285.1	ALL08446.1	AQ505_01515	AQ505_25020	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
ALL04914.1	ALL04285.1	AQ505_05065	AQ505_01515	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
ALL04914.1	ALL08446.1	AQ505_05065	AQ505_25020	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
ALL04949.1	ALL04285.1	AQ505_05245	AQ505_01515	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ALL08446.1	ALL04285.1	AQ505_25020	AQ505_01515	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
ALL08446.1	ALL04914.1	AQ505_25020	AQ505_05065	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901