(7 nodes) Alpha-helical ferredoxin network (Pedobacter sp. PACM27299)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALL08106.1	Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	ALL08446.1	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	ALL07261.1	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	gltD	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
	ALL05215.1	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	ALL04914.1	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	ALL04451.1	[Fe-S]-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)

Your Current Organism:

Pedobacter sp. PACM27299

NCBI taxonomy Id: 1727164
Other names: P. sp. PACM 27299, Pedobacter sp. PACM 27299

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALL04451.1	ALL08106.1	AQ505_02435	AQ505_23075	[Fe-S]-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
ALL04914.1	ALL08446.1	AQ505_05065	AQ505_25020	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
ALL05215.1	ALL08106.1	AQ505_06735	AQ505_23075	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
ALL08106.1	ALL04451.1	AQ505_23075	AQ505_02435	Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	[Fe-S]-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
ALL08106.1	ALL05215.1	AQ505_23075	AQ505_06735	Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
ALL08446.1	ALL04914.1	AQ505_25020	AQ505_05065	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901