STRINGSTRING
ALL08446.1 ALL08446.1 ALL04245.1 ALL04245.1 ALL04914.1 ALL04914.1 ALL04949.1 ALL04949.1 thrS thrS ALL08842.1 ALL08842.1 ALL08872.1 ALL08872.1 ychF ychF ALL07871.1 ALL07871.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALL08446.1Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
ALL04245.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
ALL04914.1Fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
ALL04949.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
thrSthreonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). (641 aa)
ALL08842.1Molybdopterin converting factor, small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)
ALL08872.1Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)
ychFGTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (364 aa)
ALL07871.1MFS transporter; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (736 aa)
Your Current Organism:
Pedobacter sp. PACM27299
NCBI taxonomy Id: 1727164
Other names: P. sp. PACM 27299, Pedobacter sp. PACM 27299
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