(7 nodes) Mixed, incl. DoxX, and NmrA-like family network (Salegentibacter sp. T436)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APS38617.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	APS38618.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
	APS38619.1	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	APS38620.1	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	APS40734.1	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	APS38621.1	Histone H1; Derived by automated computational analysis using gene prediction method: Protein Homology. (58 aa)
	APS39030.1	Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)

Your Current Organism:

Salegentibacter sp. T436

NCBI taxonomy Id: 1729720
Other names: S. sp. T436

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APS38617.1	APS38618.1	AO058_06825	AO058_06830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
APS38617.1	APS38619.1	AO058_06825	AO058_06835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
APS38617.1	APS38620.1	AO058_06825	AO058_06840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
APS38618.1	APS38617.1	AO058_06830	AO058_06825	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
APS38618.1	APS38619.1	AO058_06830	AO058_06835	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
APS38618.1	APS38620.1	AO058_06830	AO058_06840	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
APS38618.1	APS39030.1	AO058_06830	AO058_09175	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
APS38619.1	APS38617.1	AO058_06835	AO058_06825	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
APS38619.1	APS38618.1	AO058_06835	AO058_06830	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
APS38619.1	APS38620.1	AO058_06835	AO058_06840	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
APS38619.1	APS40734.1	AO058_06835	AO058_06845	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
APS38620.1	APS38617.1	AO058_06840	AO058_06825	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
APS38620.1	APS38618.1	AO058_06840	AO058_06830	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
APS38620.1	APS38619.1	AO058_06840	AO058_06835	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
APS38620.1	APS40734.1	AO058_06840	AO058_06845	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
APS38621.1	APS40734.1	AO058_06850	AO058_06845	Histone H1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
APS39030.1	APS38618.1	AO058_09175	AO058_06830	Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
APS40734.1	APS38619.1	AO058_06845	AO058_06835	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
APS40734.1	APS38620.1	AO058_06845	AO058_06840	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
APS40734.1	APS38621.1	AO058_06845	AO058_06850	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histone H1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409