(46 nodes) Thioredoxin-like superfamily network (Pedobacter sp. Leaf41)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KQN33304.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)
	KQN37887.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	KQN37980.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	KQN38008.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	KQN38045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	KQN38203.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	KQN38360.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	KQN38500.1	Thiol-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	KQN38518.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	KQN38707.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
	KQN38731.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
	KQN38792.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	KQN38798.1	Electron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	KQN38896.1	Redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	KQN38981.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	KQN39045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)
	KQN35818.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	KQN35993.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
	KQN36136.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	KQN36398.1	Disulfide bond formation protein DsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
	KQN36200.1	Arsenate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (126 aa)
	KQN36310.1	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	KQN36352.1	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	KQN34918.1	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family. (171 aa)
	KQN34958.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	KQN35033.1	SelT/selW/selH selenoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
	KQN35178.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
	KQN35184.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	KQN34299.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	KQN34406.1	Disulfide bond formation protein DsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa)
	KQN34435.1	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	KQN34469.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	KQN34470.1	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	KQN34597.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	KQN34616.1	NADH-quinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	KQN33943.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	KQN34045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	KQN33434.1	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
	KQN33435.1	Thioredoxin peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	KQN33438.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (106 aa)
	KQN33461.1	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family. (172 aa)
	KQN32418.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	KQN32451.1	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	KQN30834.1	Thiol peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	KQN28582.1	ArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (115 aa)
	KQN36793.1	Protein-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)

Your Current Organism:

Pedobacter sp. Leaf41

NCBI taxonomy Id: 1736218
Other names: P. sp. Leaf41

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQN28582.1	KQN34435.1	ASE92_19675	ASE92_12615	ArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
KQN30834.1	KQN34470.1	ASE92_19040	ASE92_12815	Thiol peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
KQN32451.1	KQN34470.1	ASE92_17760	ASE92_12815	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
KQN33434.1	KQN33435.1	ASE92_16705	ASE92_16710	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
KQN33435.1	KQN33434.1	ASE92_16710	ASE92_16705	Thioredoxin peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
KQN33435.1	KQN34470.1	ASE92_16710	ASE92_12815	Thioredoxin peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KQN33461.1	KQN34470.1	ASE92_16840	ASE92_12815	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KQN33461.1	KQN34918.1	ASE92_16840	ASE92_09770	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.888
KQN33461.1	KQN36352.1	ASE92_16840	ASE92_09570	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KQN33943.1	KQN34470.1	ASE92_14960	ASE92_12815	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
KQN33943.1	KQN36352.1	ASE92_14960	ASE92_09570	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
KQN33943.1	KQN38798.1	ASE92_14960	ASE92_05090	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
KQN34045.1	KQN34299.1	ASE92_15540	ASE92_11855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
KQN34045.1	KQN37887.1	ASE92_15540	ASE92_00100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
KQN34299.1	KQN34045.1	ASE92_11855	ASE92_15540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
KQN34299.1	KQN34406.1	ASE92_11855	ASE92_12465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Disulfide bond formation protein DsbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
KQN34299.1	KQN34470.1	ASE92_11855	ASE92_12815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
KQN34299.1	KQN34958.1	ASE92_11855	ASE92_10000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
KQN34299.1	KQN36136.1	ASE92_11855	ASE92_08370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KQN34299.1	KQN36352.1	ASE92_11855	ASE92_09570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554