29 items (Xanthomonas sp. Leaf148) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KQR15884.1	c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (754 aa)
	KQR11328.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	KQR10742.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	KQR10771.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	KQR10786.1	PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	KQR10803.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
	KQR09123.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	KQR07847.1	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (654 aa)
	KQR07912.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	KQR08069.1	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	KQR07657.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
	KQR07585.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (920 aa)
	KQR07587.1	c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	KQR07637.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (988 aa)
	KQR07638.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (973 aa)
	KQR07639.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (695 aa)
	KQR07227.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)
	KQR18136.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1010 aa)
	KQR18680.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	KQR18681.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	KQR18257.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	KQR18325.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	KQR13117.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1011 aa)
	KQR13596.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	KQR13666.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)
	KQR13757.1	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (788 aa)
	KQR11282.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (624 aa)
	KQR11298.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (865 aa)
	KQR11302.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)

Your Current Organism:

Xanthomonas sp. Leaf148

NCBI taxonomy Id: 1736275
Other names: X. sp. Leaf148

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQR07227.1	KQR07585.1	ASF90_20255	ASF90_19535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
KQR07227.1	KQR07587.1	ASF90_20255	ASF90_19545	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
KQR07227.1	KQR07637.1	ASF90_20255	ASF90_19805	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
KQR07227.1	KQR07638.1	ASF90_20255	ASF90_19810	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
KQR07227.1	KQR07639.1	ASF90_20255	ASF90_19815	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KQR07227.1	KQR07657.1	ASF90_20255	ASF90_19305	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KQR07227.1	KQR07847.1	ASF90_20255	ASF90_16910	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KQR07227.1	KQR07912.1	ASF90_20255	ASF90_17270	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
KQR07227.1	KQR08069.1	ASF90_20255	ASF90_18125	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
KQR07227.1	KQR09123.1	ASF90_20255	ASF90_15525	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KQR07227.1	KQR10742.1	ASF90_20255	ASF90_14350	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
KQR07227.1	KQR10771.1	ASF90_20255	ASF90_14535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
KQR07227.1	KQR10786.1	ASF90_20255	ASF90_14625	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KQR07227.1	KQR10803.1	ASF90_20255	ASF90_14710	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
KQR07227.1	KQR11282.1	ASF90_20255	ASF90_11845	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KQR07227.1	KQR11298.1	ASF90_20255	ASF90_11935	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
KQR07227.1	KQR11302.1	ASF90_20255	ASF90_11955	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KQR07227.1	KQR11328.1	ASF90_20255	ASF90_12090	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KQR07227.1	KQR13117.1	ASF90_20255	ASF90_07825	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
KQR07227.1	KQR13596.1	ASF90_20255	ASF90_10555	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983