80 items (Xanthomonas sp. Leaf148) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KQR13854.1	PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	KQR18019.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (690 aa)
	KQR18665.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	KQR18021.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (951 aa)
	KQR18342.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	KQR18391.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	KQR18393.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1060 aa)
	KQR18396.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	KQR18401.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (651 aa)
	KQR18410.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	KQR18442.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	KQR18449.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	KQR18496.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	KQR18503.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	KQR18517.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	KQR18589.1	Two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	KQR12504.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1149 aa)
	KQR13813.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	KQR12664.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KQR12695.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	KQR12709.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	KQR12810.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	KQR12901.1	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	KQR12907.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	KQR09014.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	KQR09058.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	KQR09100.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	KQR07847.1	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (654 aa)
	KQR07848.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (765 aa)
	KQR08103.1	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	ntrC	Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (475 aa)
	KQR07453.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	KQR07477.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1256 aa)
	KQR07478.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	sirA	In Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	KQR07660.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	KQR07587.1	c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	KQR07592.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	KQR07609.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	KQR07611.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	KQR07646.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	KQR07228.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	KQR15857.1	Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	KQR15858.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
	cheB-2	Chemotaxis protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (358 aa)
	KQR15522.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	KQR12943.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)
	KQR12952.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	KQR12979.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	KQR13058.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	KQR13100.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	KQR13876.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	KQR13878.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (879 aa)
	KQR13135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	KQR13280.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	KQR13288.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	KQR13375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	KQR13380.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	KQR13401.1	Pilus assembly protein PilG; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	KQR13402.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	KQR13405.1	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (2364 aa)
	KQR13469.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1188 aa)
	KQR13470.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1182 aa)
	KQR13471.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1192 aa)
	cheB	Two-component system response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (375 aa)
	KQR13619.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	KQR13947.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	KQR11619.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	KQR11365.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	KQR11366.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	KQR11452.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	KQR11518.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	KQR11562.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	KQR11563.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
	KQR10664.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	KQR10732.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	KQR10733.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1364 aa)
	KQR10742.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	KQR10786.1	PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	KQR09013.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)

Your Current Organism:

Xanthomonas sp. Leaf148

NCBI taxonomy Id: 1736275
Other names: X. sp. Leaf148

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQR07228.1	KQR07477.1	ASF90_20265	ASF90_18890	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
KQR07228.1	KQR07587.1	ASF90_20265	ASF90_19545	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
KQR07228.1	KQR07592.1	ASF90_20265	ASF90_19570	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
KQR07228.1	KQR07848.1	ASF90_20265	ASF90_16915	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
KQR07228.1	KQR09058.1	ASF90_20265	ASF90_16080	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KQR07228.1	KQR10664.1	ASF90_20265	ASF90_13930	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
KQR07228.1	KQR10733.1	ASF90_20265	ASF90_14305	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
KQR07228.1	KQR11366.1	ASF90_20265	ASF90_12300	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KQR07228.1	KQR11563.1	ASF90_20265	ASF90_13395	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
KQR07228.1	KQR12504.1	ASF90_20265	ASF90_04330	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
KQR07228.1	KQR12943.1	ASF90_20265	ASF90_06830	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
KQR07228.1	KQR12952.1	ASF90_20265	ASF90_06880	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
KQR07228.1	KQR13100.1	ASF90_20265	ASF90_07720	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
KQR07228.1	KQR13380.1	ASF90_20265	ASF90_09340	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
KQR07228.1	KQR13469.1	ASF90_20265	ASF90_09865	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
KQR07228.1	KQR13470.1	ASF90_20265	ASF90_09870	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KQR07228.1	KQR18019.1	ASF90_20265	ASF90_00525	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
KQR07228.1	KQR18021.1	ASF90_20265	ASF90_00540	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
KQR07228.1	KQR18393.1	ASF90_20265	ASF90_02610	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
KQR07228.1	KQR18396.1	ASF90_20265	ASF90_02625	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669