Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KQS51257.1 | KQS51258.1 | ASG20_04220 | ASG20_04225 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.891 |
| KQS51257.1 | KQS51260.1 | ASG20_04220 | ASG20_04235 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.783 |
| KQS51257.1 | KQS51261.1 | ASG20_04220 | ASG20_04240 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.782 |
| KQS51257.1 | KQS51263.1 | ASG20_04220 | ASG20_04255 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.554 |
| KQS51257.1 | KQS51853.1 | ASG20_04220 | ASG20_04250 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.535 |
| KQS51257.1 | hflX | ASG20_04220 | ASG20_04265 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.485 |
| KQS51257.1 | hfq | ASG20_04220 | ASG20_04260 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | RNA-binding protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.410 |
| KQS51257.1 | ntrC | ASG20_04220 | ASG20_04245 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.781 |
| KQS51258.1 | KQS51257.1 | ASG20_04225 | ASG20_04220 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | 0.891 |
| KQS51258.1 | KQS51260.1 | ASG20_04225 | ASG20_04235 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.673 |
| KQS51258.1 | KQS51261.1 | ASG20_04225 | ASG20_04240 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.669 |
| KQS51258.1 | KQS51263.1 | ASG20_04225 | ASG20_04255 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.477 |
| KQS51258.1 | KQS51853.1 | ASG20_04225 | ASG20_04250 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.476 |
| KQS51258.1 | ntrC | ASG20_04225 | ASG20_04245 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.669 |
| KQS51260.1 | KQS51257.1 | ASG20_04235 | ASG20_04220 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family. | 0.783 |
| KQS51260.1 | KQS51258.1 | ASG20_04235 | ASG20_04225 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.673 |
| KQS51260.1 | KQS51261.1 | ASG20_04235 | ASG20_04240 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.918 |
| KQS51260.1 | KQS51263.1 | ASG20_04235 | ASG20_04255 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.790 |
| KQS51260.1 | KQS51853.1 | ASG20_04235 | ASG20_04250 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.821 |
| KQS51260.1 | hflX | ASG20_04235 | ASG20_04265 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.522 |
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