(6 nodes) Mixed, incl. Ribosomal small subunit binding, and Ribosomal protein L25/Gln-tRNA synthetase, N-terminal network (Chryseobacterium sp. Leaf394)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplP	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (141 aa)
	rpmC	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family. (61 aa)
	rpmD	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology. (58 aa)
	rplY	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (212 aa)
	rpsU	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family. (65 aa)
	KQS94233.1	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)

Your Current Organism:

Chryseobacterium sp. Leaf394

NCBI taxonomy Id: 1736361
Other names: C. sp. Leaf394

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQS94233.1	rplP	ASG21_18495	ASG21_00755	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
KQS94233.1	rplY	ASG21_18495	ASG21_14545	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.999
KQS94233.1	rpmC	ASG21_18495	ASG21_00760	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	0.999
KQS94233.1	rpmD	ASG21_18495	ASG21_00810	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KQS94233.1	rpsU	ASG21_18495	ASG21_18485	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.999
rplP	KQS94233.1	ASG21_00755	ASG21_18495	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplP	rplY	ASG21_00755	ASG21_14545	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.999
rplP	rpmC	ASG21_00755	ASG21_00760	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	0.999
rplP	rpmD	ASG21_00755	ASG21_00810	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplP	rpsU	ASG21_00755	ASG21_18485	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.999
rplY	KQS94233.1	ASG21_14545	ASG21_18495	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplY	rplP	ASG21_14545	ASG21_00755	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplY	rpmC	ASG21_14545	ASG21_00760	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	0.999
rplY	rpmD	ASG21_14545	ASG21_00810	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplY	rpsU	ASG21_14545	ASG21_18485	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.999
rpmC	KQS94233.1	ASG21_00760	ASG21_18495	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rpmC	rplP	ASG21_00760	ASG21_00755	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rpmC	rplY	ASG21_00760	ASG21_14545	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.999
rpmC	rpmD	ASG21_00760	ASG21_00810	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rpmC	rpsU	ASG21_00760	ASG21_18485	50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.999