(95 nodes) Mostly uncharacterized, incl. Sporulation, and Bifunctional DNA primase/polymerase, N-terminal network (Streptomyces sp. Root264)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KRD24251.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	KRD24343.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	KRD24379.1	Tat pathway signal sequence domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	KRD24706.1	Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	KRD24470.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	ASE41_01585	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	KRD24554.1	Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	KRD24556.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	KRD24558.1	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate mutase family. (223 aa)
	KRD14907.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	KRD14908.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	KRD14920.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	KRD14979.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	KRD10704.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	KRD10759.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	KRC95332.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1293 aa)
	KRC95333.1	Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	KRC95334.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	KRC95335.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	KRC95337.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	KRC95453.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	KRC95454.1	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	KRC95471.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	KRC95531.1	Suppressor of fused domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	KRC95672.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1068 aa)
	KRC95685.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	KRC95713.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	KRC95821.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (868 aa)
	KRC95861.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	KRD22601.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	KRD22613.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
	KRD22645.1	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
	KRD22646.1	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	KRD22650.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	KRD23022.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	KRD22891.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	KRD21110.1	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
	KRD21111.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	KRD21144.1	Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	KRD21187.1	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	KRD21196.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	KRD21197.1	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	KRD21263.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	KRD21264.1	Peptidoglycan bridge formation protein FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	KRD21265.1	Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	KRD21272.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (803 aa)
	KRD21295.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	KRD18716.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (604 aa)
	KRD18923.1	Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	KRD19054.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	KRD19093.1	rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	KRD19094.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	KRD19095.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	KRD19101.1	Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	KRD19102.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	KRD17249.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	KRD17250.1	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1220 aa)
	KRD17299.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	KRD17304.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	KRD17305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
	KRD17511.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	KRD17517.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	KRD17542.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
	KRD17654.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	KRD17670.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	KRD17735.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	KRD17671.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	KRD17672.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	KRD17673.1	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	KRD17736.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	KRD16216.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	KRD16217.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)
	KRD16218.1	Tat pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	KRD16240.1	Serine-threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	KRD15492.1	NYN domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	KRD15611.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	KRD15612.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	KRD15553.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	KRD13612.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	KRD13666.1	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	KRD13667.1	NsdA; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	KRD13673.1	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	KRD13742.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	KRD09363.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	KRD04607.1	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	KRD02788.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	KRD02243.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	KRD02245.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	ASE41_34255	YkuD domain-containing protein; Involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	KRD01478.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
	KRD00615.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	KRD00723.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)
	KRD00772.1	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	KRD00791.1	F0F1 ATP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
	KRD00795.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)

Your Current Organism:

Streptomyces sp. Root264

NCBI taxonomy Id: 1736503
Other names: S. sp. Root264

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE41_01585	KRC95332.1	ASE41_01585	ASE41_05960	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
ASE41_01585	KRC95672.1	ASE41_01585	ASE41_07970	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
ASE41_01585	KRC95685.1	ASE41_01585	ASE41_08045	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
ASE41_01585	KRC95821.1	ASE41_01585	ASE41_08820	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
ASE41_01585	KRD00615.1	ASE41_01585	ASE41_35840	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
ASE41_01585	KRD00795.1	ASE41_01585	ASE41_36940	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
ASE41_01585	KRD02245.1	ASE41_01585	ASE41_34095	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
ASE41_01585	KRD09363.1	ASE41_01585	ASE41_30665	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
ASE41_01585	KRD10704.1	ASE41_01585	ASE41_04340	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
ASE41_01585	KRD10759.1	ASE41_01585	ASE41_04645	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
ASE41_01585	KRD13673.1	ASE41_01585	ASE41_26680	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
ASE41_01585	KRD13742.1	ASE41_01585	ASE41_26970	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
ASE41_01585	KRD14907.1	ASE41_01585	ASE41_03785	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
ASE41_01585	KRD15492.1	ASE41_01585	ASE41_25505	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NYN domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
ASE41_01585	KRD16240.1	ASE41_01585	ASE41_24565	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine-threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
ASE41_01585	KRD17511.1	ASE41_01585	ASE41_22780	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
ASE41_01585	KRD17517.1	ASE41_01585	ASE41_22825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
ASE41_01585	KRD17654.1	ASE41_01585	ASE41_23675	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
ASE41_01585	KRD18716.1	ASE41_01585	ASE41_18070	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
ASE41_01585	KRD19054.1	ASE41_01585	ASE41_20120	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495