STRINGSTRING
dcd dcd dut dut ASD19_02700 ASD19_02700 rsmI rsmI KQZ05189.1 KQZ05189.1 KQZ05200.1 KQZ05200.1 KQZ05201.1 KQZ05201.1 KQZ05202.1 KQZ05202.1 KQZ05203.1 KQZ05203.1 KQZ05204.1 KQZ05204.1 KQZ05297.1 KQZ05297.1 KQZ05205.1 KQZ05205.1 KQZ05206.1 KQZ05206.1 KQY99355.1 KQY99355.1 KQY99319.1 KQY99319.1 KQY98696.1 KQY98696.1 KQY98728.1 KQY98728.1 nrdR nrdR upp upp tadA tadA KQY97023.1 KQY97023.1 KQY96773.1 KQY96773.1 tdk tdk tmk tmk KQZ09929.1 KQZ09929.1 KQZ07965.1 KQZ07965.1 ppnP ppnP ASD19_13640 ASD19_13640 KQZ03288.1 KQZ03288.1 nrdI nrdI KQZ03290.1 KQZ03290.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dcdDeoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate. (201 aa)
dutDeoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (146 aa)
ASD19_02700NADH pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
rsmI16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (272 aa)
KQZ05189.1Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. (274 aa)
KQZ05200.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
KQZ05201.1Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
KQZ05202.1Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
KQZ05203.1Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
KQZ05204.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (426 aa)
KQZ05297.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (395 aa)
KQZ05205.1Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
KQZ05206.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
KQY99355.1Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
KQY99319.1Nucleoside diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
KQY98696.1Multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (585 aa)
KQY98728.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
nrdRNrdR family transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (165 aa)
uppUracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. (210 aa)
tadAHypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (143 aa)
KQY97023.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (932 aa)
KQY96773.1Multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (556 aa)
tdkThymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
tmkThymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (213 aa)
KQZ09929.1Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
KQZ07965.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
ppnPHypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (102 aa)
ASD19_13640Ribonucleoside-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (324 aa)
KQZ03288.1Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (720 aa)
nrdIRibonucleotide reductase stimulatory protein; Probably involved in ribonucleotide reductase function. (144 aa)
KQZ03290.1NrdH-redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)
Your Current Organism:
Microbacterium sp. Root53
NCBI taxonomy Id: 1736553
Other names: M. sp. Root53
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