STRINGSTRING
KQY98794.1 KQY98794.1 glyQS glyQS KQZ11717.1 KQZ11717.1 KQZ11802.1 KQZ11802.1 KQZ11808.1 KQZ11808.1 KQZ11814.1 KQZ11814.1 KQZ11817.1 KQZ11817.1 KQZ12041.1 KQZ12041.1 ASD19_01260 ASD19_01260 KQZ11982.1 KQZ11982.1 KQZ11989.1 KQZ11989.1 KQZ12056.1 KQZ12056.1 KQZ12009.1 KQZ12009.1 KQZ12010.1 KQZ12010.1 KQZ04802.1 KQZ04802.1 KQZ05239.1 KQZ05239.1 sigA sigA KQZ04821.1 KQZ04821.1 KQZ04826.1 KQZ04826.1 KQZ04834.1 KQZ04834.1 ASD19_02065 ASD19_02065 KQZ05243.1 KQZ05243.1 uvrC uvrC uvrA uvrA uvrB uvrB vapC vapC KQZ04924.1 KQZ04924.1 KQZ04925.1 KQZ04925.1 KQZ05256.1 KQZ05256.1 KQZ05257.1 KQZ05257.1 KQZ05258.1 KQZ05258.1 KQZ04999.1 KQZ04999.1 KQZ05000.1 KQZ05000.1 xseA xseA xseB xseB ASD19_03190 ASD19_03190 KQZ05025.1 KQZ05025.1 KQZ05274.1 KQZ05274.1 mfd mfd KQZ05057.1 KQZ05057.1 rsmA rsmA KQZ05069.1 KQZ05069.1 metG metG rsmI rsmI KQZ05078.1 KQZ05078.1 KQZ05084.1 KQZ05084.1 KQZ05093.1 KQZ05093.1 KQZ05107.1 KQZ05107.1 KQZ05111.1 KQZ05111.1 KQZ05112.1 KQZ05112.1 KQZ05123.1 KQZ05123.1 KQZ05178.1 KQZ05178.1 KQZ05219.1 KQZ05219.1 trpS trpS KQZ05222.1 KQZ05222.1 KQZ05238.1 KQZ05238.1 KQY99175.1 KQY99175.1 KQY99185.1 KQY99185.1 rnc rnc mutM mutM KQY99190.1 KQY99190.1 smc smc KQY99196.1 KQY99196.1 rimM rimM trmD trmD KQY99225.1 KQY99225.1 KQY99244.1 KQY99244.1 KQY99246.1 KQY99246.1 xerC xerC ASD19_05100 ASD19_05100 mnmA mnmA ligA ligA deaD deaD dinB dinB orn orn KQY99287.1 KQY99287.1 KQY99296.1 KQY99296.1 valS valS ileS ileS KQY99321.1 KQY99321.1 KQY99334.1 KQY99334.1 KQY98698.1 KQY98698.1 KQY98706.1 KQY98706.1 KQY98716.1 KQY98716.1 KQY98736.1 KQY98736.1 rsmH rsmH KQY98774.1 KQY98774.1 KQY98776.1 KQY98776.1 KQY98858.1 KQY98858.1 dnaE2 dnaE2 KQY98797.1 KQY98797.1 KQY98859.1 KQY98859.1 KQY98860.1 KQY98860.1 KQY98799.1 KQY98799.1 rph rph KQY98813.1 KQY98813.1 ku ku KQY98818.1 KQY98818.1 KQY98823.1 KQY98823.1 gltX gltX KQY98841.1 KQY98841.1 KQY98489.1 KQY98489.1 rpoB rpoB rpoC rpoC rpoA rpoA truA truA KQY98654.1 KQY98654.1 KQY98577.1 KQY98577.1 KQY98578.1 KQY98578.1 tsaD tsaD KQY98580.1 KQY98580.1 KQY98608.1 KQY98608.1 KQY98611.1 KQY98611.1 ASD19_07280 ASD19_07280 ASD19_07400 ASD19_07400 KQY97634.1 KQY97634.1 KQY97636.1 KQY97636.1 KQY97564.1 KQY97564.1 nusG nusG KQY97616.1 KQY97616.1 KQY97617.1 KQY97617.1 KQY96889.1 KQY96889.1 KQY96890.1 KQY96890.1 sbcD sbcD KQY96895.1 KQY96895.1 tadA tadA KQY96915.1 KQY96915.1 aspS aspS KQY96935.1 KQY96935.1 ung ung KQY96953.1 KQY96953.1 trmB trmB KQY96959.1 KQY96959.1 argS argS rho rho KQY97134.1 KQY97134.1 KQY96991.1 KQY96991.1 KQY97019.1 KQY97019.1 proS proS KQY97023.1 KQY97023.1 nusA nusA rbfA rbfA KQY97028.1 KQY97028.1 truB truB pnp pnp rnj rnj recA recA miaB miaB miaA miaA lexA lexA KQY97103.1 KQY97103.1 pheS pheS pheT pheT tyrS tyrS KQY96757.1 KQY96757.1 rlmN rlmN KQY96798.1 KQY96798.1 radA radA KQY96820.1 KQY96820.1 KQY96826.1 KQY96826.1 KQY96827.1 KQY96827.1 KQY96831.1 KQY96831.1 KQY96833.1 KQY96833.1 KQY96836.1 KQY96836.1 KQY96845.1 KQY96845.1 KQY96838.1 KQY96838.1 ASD19_09845 ASD19_09845 dnaX dnaX recR recR tdk tdk topA topA KQY96272.1 KQY96272.1 KQY96317.1 KQY96317.1 KQY96286.1 KQY96286.1 KQY96290.1 KQY96290.1 ASD19_10235 ASD19_10235 cysS cysS KQY96304.1 KQY96304.1 KQY96306.1 KQY96306.1 KQZ10044.1 KQZ10044.1 KQZ10045.1 KQZ10045.1 polA polA KQZ10050.1 KQZ10050.1 fmt fmt KQZ09978.1 KQZ09978.1 rpoZ rpoZ nusB nusB KQZ09996.1 KQZ09996.1 alaS alaS KQZ10052.1 KQZ10052.1 ruvB ruvB ruvA ruvA ruvC ruvC thrS thrS KQZ10019.1 KQZ10019.1 KQZ10025.1 KQZ10025.1 KQZ10037.1 KQZ10037.1 tilS tilS KQZ09892.1 KQZ09892.1 lysS lysS vapC-2 vapC-2 KQZ09909.1 KQZ09909.1 serS serS KQZ09925.1 KQZ09925.1 nucS nucS KQZ07956.1 KQZ07956.1 KQZ07867.1 KQZ07867.1 KQZ07870.1 KQZ07870.1 KQZ07876.1 KQZ07876.1 KQZ07893.1 KQZ07893.1 KQZ07908.1 KQZ07908.1 KQZ07909.1 KQZ07909.1 dnaG dnaG KQZ07913.1 KQZ07913.1 recO recO KQZ07925.1 KQZ07925.1 rsmG rsmG rnpA rnpA dnaA dnaA KQZ07293.1 KQZ07293.1 recF recF gyrB gyrB gyrA gyrA KQZ07301.1 KQZ07301.1 KQZ07314.1 KQZ07314.1 ybeY ybeY KQZ07215.1 KQZ07215.1 dnaJ dnaJ KQZ07242.1 KQZ07242.1 KQZ07255.1 KQZ07255.1 leuS leuS KQZ07249.1 KQZ07249.1 KQZ07252.1 KQZ07252.1 KQZ07204.1 KQZ07204.1 KQZ07200.1 KQZ07200.1 KQZ06573.1 KQZ06573.1 KQZ06574.1 KQZ06574.1 lig lig KQZ06612.1 KQZ06612.1 KQZ06030.1 KQZ06030.1 KQZ06034.1 KQZ06034.1 KQZ06070.1 KQZ06070.1 KQZ06052.1 KQZ06052.1 KQZ06053.1 KQZ06053.1 KQZ05804.1 KQZ05804.1 KQZ05811.1 KQZ05811.1 KQZ05816.1 KQZ05816.1 KQZ04102.1 KQZ04102.1 KQZ04105.1 KQZ04105.1 xerD xerD KQZ04109.1 KQZ04109.1 KQZ04111.1 KQZ04111.1 KQZ03689.1 KQZ03689.1 ASD19_13640 ASD19_13640 KQZ03288.1 KQZ03288.1 KQZ03295.1 KQZ03295.1 ASD19_13695 ASD19_13695 KQZ02901.1 KQZ02901.1 KQZ02803.1 KQZ02803.1 KQZ02695.1 KQZ02695.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KQY98794.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
glyQSglycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (462 aa)
KQZ11717.1Fe-S cluster assembly protein HesB; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
KQZ11802.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (356 aa)
KQZ11808.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
KQZ11814.1Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
KQZ11817.1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (457 aa)
KQZ12041.1DNA-3-methyladenine glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family. (223 aa)
ASD19_01260Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
KQZ11982.1RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)
KQZ11989.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)
KQZ12056.1ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (658 aa)
KQZ12009.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
KQZ12010.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
KQZ04802.1DNA topoisomerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)
KQZ05239.1DNA topoisomerase IV subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (693 aa)
sigARNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (458 aa)
KQZ04821.1RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (817 aa)
KQZ04826.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
KQZ04834.1rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (273 aa)
ASD19_02065DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
KQZ05243.1DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
uvrCExcinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (651 aa)
uvrAABC-ATPase UvrA; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (962 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (693 aa)
vapCTwitching motility protein PilT; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (131 aa)
KQZ04924.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
KQZ04925.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
KQZ05256.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1076 aa)
KQZ05257.1RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (473 aa)
KQZ05258.1Metal-dependent phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
KQZ04999.1DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
KQZ05000.1Recombinase RmuC; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (437 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (82 aa)
ASD19_03190Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
KQZ05025.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
KQZ05274.1histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. (419 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1207 aa)
KQZ05057.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
rsmA16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (291 aa)
KQZ05069.1Deoxyribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
metGmethionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (525 aa)
rsmI16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (272 aa)
KQZ05078.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
KQZ05084.1ATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (1324 aa)
KQZ05093.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
KQZ05107.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
KQZ05111.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
KQZ05112.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
KQZ05123.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)
KQZ05178.123S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (429 aa)
KQZ05219.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
trpStryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (325 aa)
KQZ05222.1DNA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPG family. (286 aa)
KQZ05238.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
KQY99175.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
KQY99185.116S rRNA (guanine(966)-N(2))-methyltransferase RsmD; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
rncRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (232 aa)
mutMformamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (309 aa)
KQY99190.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1185 aa)
KQY99196.1SAM-dependent methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. (381 aa)
rimM16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (195 aa)
trmDtRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (226 aa)
KQY99225.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
KQY99244.1Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (223 aa)
KQY99246.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family. (120 aa)
xerCRecombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (300 aa)
ASD19_05100ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
mnmAtRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (361 aa)
ligAAromatic ring-opening dioxygenase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (779 aa)
deaDCold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (599 aa)
dinBDNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (419 aa)
ornOligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (208 aa)
KQY99287.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
KQY99296.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPG family. (342 aa)
valSvaline--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner. (860 aa)
ileSisoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1106 aa)
KQY99321.1Ribonuclease G; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
KQY99334.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
KQY98698.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
KQY98706.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
KQY98716.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
KQY98736.1Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (706 aa)
rsmHRibosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (317 aa)
KQY98774.1RNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (306 aa)
KQY98776.1DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1170 aa)
KQY98858.15'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
dnaE2DNA polymerase III subunit alpha; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1138 aa)
KQY98797.1Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology. (1047 aa)
KQY98859.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
KQY98860.1Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
KQY98799.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (244 aa)
KQY98813.1ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (797 aa)
kuKu protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (294 aa)
KQY98818.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1008 aa)
KQY98823.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
gltXglutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (504 aa)
KQY98841.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (401 aa)
KQY98489.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1163 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1291 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa)
truAPseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (283 aa)
KQY98654.1tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
KQY98577.1tRNA threonylcarbamoyladenosine biosynthesis protein TsaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
KQY98578.1Ribosomal-protein-alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
tsaDtRNA threonylcarbamoyl adenosine modification protein TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (367 aa)
KQY98580.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
KQY98608.1ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
KQY98611.1ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
ASD19_07280Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
ASD19_07400Mutator family transposase; Required for the transposition of the insertion element. (415 aa)
KQY97634.1RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (214 aa)
KQY97636.1Hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system. (116 aa)
KQY97564.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
nusGAntitermination protein NusG; Participates in transcription elongation, termination and antitermination. (340 aa)
KQY97616.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (835 aa)
KQY97617.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (519 aa)
KQY96889.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
KQY96890.1DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (130 aa)
sbcDDNA repair exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (384 aa)
KQY96895.1CMP deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
tadAHypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (143 aa)
KQY96915.1RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa)
aspSaspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (593 aa)
KQY96935.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (236 aa)
KQY96953.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
trmBtRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (249 aa)
KQY96959.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
argSarginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (682 aa)
KQY97134.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (220 aa)
KQY96991.1Translation factor SUA5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUA5 family. (240 aa)
KQY97019.1Ribonuclease II; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
proSproline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...] (588 aa)
KQY97023.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (932 aa)
nusATranscription elongation factor NusA; Participates in both transcription termination and antitermination. (329 aa)
rbfARibosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (148 aa)
KQY97028.1Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
truBtRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (303 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (757 aa)
rnjRibonuclease; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa)
recADNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (351 aa)
miaB(dimethylallyl)adenosine tRNA methylthiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (515 aa)
miaAtRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (308 aa)
lexALexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (239 aa)
KQY97103.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (266 aa)
pheSphenylalanine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (346 aa)
pheTphenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (830 aa)
tyrStyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (430 aa)
KQY96757.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
rlmN23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (416 aa)
KQY96798.1DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family. (306 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (454 aa)
KQY96820.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
KQY96826.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
KQY96827.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
KQY96831.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
KQY96833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
KQY96836.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (380 aa)
KQY96845.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
KQY96838.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
ASD19_09845Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)
dnaXDNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (795 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (197 aa)
tdkThymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (948 aa)
KQY96272.1DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
KQY96317.1RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (415 aa)
KQY96286.1DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
KQY96290.1Fatty acid-binding protein; May play a role in the intracellular transport of hydrophobic ligands. (201 aa)
ASD19_10235CarD family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
cysScysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family. (461 aa)
KQY96304.1RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (325 aa)
KQY96306.1Lipopolysaccharide kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
KQZ10044.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
KQZ10045.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (875 aa)
KQZ10050.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (442 aa)
fmtmethionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (312 aa)
KQZ09978.1Preprotein translocase subunit SecA; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (84 aa)
nusBN utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (136 aa)
KQZ09996.1Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (155 aa)
alaSalanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (886 aa)
KQZ10052.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
ruvBATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (345 aa)
ruvAATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa)
ruvCHolliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (194 aa)
thrSthreonine--tRNA ligase; Catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. (658 aa)
KQZ10019.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
KQZ10025.1Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
KQZ10037.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (325 aa)
KQZ09892.1Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine/pyrimidine phosphoribosyltransferase family. (183 aa)
lysSlysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. (506 aa)
vapC-2Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (144 aa)
KQZ09909.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
serSserine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (431 aa)
KQZ09925.1formamidopyrimidine-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
nucSHypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. (231 aa)
KQZ07956.1rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
KQZ07867.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
KQZ07870.1DNA polymerase IV; Involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
KQZ07876.1Daunorubicin resistance protein DrrC; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
KQZ07893.13'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
KQZ07908.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
KQZ07909.1Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (641 aa)
KQZ07913.1tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (392 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (247 aa)
KQZ07925.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
rsmG16S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (212 aa)
rnpARibonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (112 aa)
dnaAChromosomal replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (473 aa)
KQZ07293.1DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (380 aa)
recFRecombinase RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (393 aa)
gyrBDNA topoisomerase IV subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (665 aa)
gyrADNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (850 aa)
KQZ07301.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
KQZ07314.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
ybeYrRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (156 aa)
KQZ07215.116S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (243 aa)
dnaJMolecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] (370 aa)
KQZ07242.1DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
KQZ07255.1Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
leuSleucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family. (857 aa)
KQZ07249.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
KQZ07252.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
KQZ07204.13-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
KQZ07200.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1202 aa)
KQZ06573.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
KQZ06574.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
ligDNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. (508 aa)
KQZ06612.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
KQZ06030.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
KQZ06034.1HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
KQZ06070.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
KQZ06052.13-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
KQZ06053.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
KQZ05804.1CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (475 aa)
KQZ05811.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
KQZ05816.1Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
KQZ04102.1NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
KQZ04105.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family. (267 aa)
xerDRecombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (300 aa)
KQZ04109.1ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
KQZ04111.1DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (563 aa)
KQZ03689.1Hypothetical protein; Required for the transposition of the insertion element. (158 aa)
ASD19_13640Ribonucleoside-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (324 aa)
KQZ03288.1Ribonucleotide-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (720 aa)
KQZ03295.1aminoacyl-tRNA deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
ASD19_13695HTH_21 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
KQZ02901.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
KQZ02803.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
KQZ02695.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
Your Current Organism:
Microbacterium sp. Root53
NCBI taxonomy Id: 1736553
Other names: M. sp. Root53
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