(8 nodes) Plasma membrane respirasome network (Fischerella sp. NIES3754)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BAU05399.1	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748. (499 aa)
	BAU06089.1	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945. (334 aa)
	BAU06645.1	Molybdopterin oxidoreductase NarB; Similar to AA sequence:cyanobase_aa:Npun_R1526; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (751 aa)
	BAU07302.1	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867. (498 aa)
	BAU07555.1	Nucleic acid binding, OB-fold, tRNA/helicase-type; Similar to AA sequence:cyanobase_aa:Npun_F0433. (183 aa)
	BAU07772.1	NADH dehydrogenase I chain E; Similar to AA sequence:cyanobase_aa:alr0751. (183 aa)
	BAU07773.1	Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Similar to AA sequence:cyanobase_aa:Ava_4654. (537 aa)
	BAU07910.1	Hypothetical protein; Similar to AA sequence:cyanobase_aa:Npun_F5801. (212 aa)

Your Current Organism:

Fischerella sp. NIES3754

NCBI taxonomy Id: 1752063
Other names: F. sp. NIES-3754, Fischerella sp. NIES-3754

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAU05399.1	BAU06089.1	FIS3754_12940	FIS3754_20000	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748.	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	0.455
BAU05399.1	BAU07555.1	FIS3754_12940	FIS3754_34850	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748.	Nucleic acid binding, OB-fold, tRNA/helicase-type; Similar to AA sequence:cyanobase_aa:Npun_F0433.	0.789
BAU05399.1	BAU07772.1	FIS3754_12940	FIS3754_37070	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748.	NADH dehydrogenase I chain E; Similar to AA sequence:cyanobase_aa:alr0751.	0.789
BAU05399.1	BAU07773.1	FIS3754_12940	FIS3754_37080	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748.	Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Similar to AA sequence:cyanobase_aa:Ava_4654.	0.999
BAU05399.1	BAU07910.1	FIS3754_12940	FIS3754_38500	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748.	Hypothetical protein; Similar to AA sequence:cyanobase_aa:Npun_F5801.	0.789
BAU06089.1	BAU05399.1	FIS3754_20000	FIS3754_12940	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748.	0.455
BAU06089.1	BAU07302.1	FIS3754_20000	FIS3754_32300	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867.	0.455
BAU06089.1	BAU07555.1	FIS3754_20000	FIS3754_34850	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	Nucleic acid binding, OB-fold, tRNA/helicase-type; Similar to AA sequence:cyanobase_aa:Npun_F0433.	0.807
BAU06089.1	BAU07772.1	FIS3754_20000	FIS3754_37070	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	NADH dehydrogenase I chain E; Similar to AA sequence:cyanobase_aa:alr0751.	0.807
BAU06089.1	BAU07773.1	FIS3754_20000	FIS3754_37080	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Similar to AA sequence:cyanobase_aa:Ava_4654.	0.999
BAU06089.1	BAU07910.1	FIS3754_20000	FIS3754_38500	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	Hypothetical protein; Similar to AA sequence:cyanobase_aa:Npun_F5801.	0.807
BAU06645.1	BAU07773.1	FIS3754_25650	FIS3754_37080	Molybdopterin oxidoreductase NarB; Similar to AA sequence:cyanobase_aa:Npun_R1526; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Similar to AA sequence:cyanobase_aa:Ava_4654.	0.501
BAU07302.1	BAU06089.1	FIS3754_32300	FIS3754_20000	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867.	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	0.455
BAU07302.1	BAU07555.1	FIS3754_32300	FIS3754_34850	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867.	Nucleic acid binding, OB-fold, tRNA/helicase-type; Similar to AA sequence:cyanobase_aa:Npun_F0433.	0.789
BAU07302.1	BAU07772.1	FIS3754_32300	FIS3754_37070	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867.	NADH dehydrogenase I chain E; Similar to AA sequence:cyanobase_aa:alr0751.	0.789
BAU07302.1	BAU07773.1	FIS3754_32300	FIS3754_37080	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867.	Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Similar to AA sequence:cyanobase_aa:Ava_4654.	0.999
BAU07302.1	BAU07910.1	FIS3754_32300	FIS3754_38500	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867.	Hypothetical protein; Similar to AA sequence:cyanobase_aa:Npun_F5801.	0.789
BAU07555.1	BAU05399.1	FIS3754_34850	FIS3754_12940	Nucleic acid binding, OB-fold, tRNA/helicase-type; Similar to AA sequence:cyanobase_aa:Npun_F0433.	NAD(P)H-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Ava_0748.	0.789
BAU07555.1	BAU06089.1	FIS3754_34850	FIS3754_20000	Nucleic acid binding, OB-fold, tRNA/helicase-type; Similar to AA sequence:cyanobase_aa:Npun_F0433.	Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Similar to AA sequence:cyanobase_aa:Npun_F5945.	0.807
BAU07555.1	BAU07302.1	FIS3754_34850	FIS3754_32300	Nucleic acid binding, OB-fold, tRNA/helicase-type; Similar to AA sequence:cyanobase_aa:Npun_F0433.	Proton-translocating NADH-quinone oxidoreductase subunit M; Similar to AA sequence:cyanobase_aa:Aazo_1867.	0.789