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rpsU-3 rpsU-3 rpsU-4 rpsU-4 rpsP rpsP rpsF rpsF BAU07426.1 BAU07426.1 rpmB rpmB rpsG rpsG rpsJ rpsJ rpsB rpsB rplJ rplJ rplL rplL rpmE rpmE rpsI rpsI rplM rplM rpsK rpsK rplO rplO rpsE rpsE rplR rplR rpsH rpsH rplE rplE rplX rplX rplN rplN rpsQ rpsQ rpmC rpmC rpsC rpsC rpsS rpsS rplB rplB rplW rplW rplC rplC rpmH rpmH hpf hpf BAU05461.1 BAU05461.1 rpmF rpmF rplU rplU rpsO rpsO BAU08850.1 BAU08850.1 rpmI rpmI rpsN rpsN rpmG rpmG rpsR rpsR rpsU rpsU rpsU-2 rpsU-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpsU-330S ribosomal protein S21; Similar to AA sequence:cyanobase_aa:Aazo_1918; Belongs to the bacterial ribosomal protein bS21 family. (59 aa)
rpsU-430S ribosomal protein S21; Ab initio prediction:Prodigal:2.6; similar to AA sequence:cyanobase_aa:asr1955; Belongs to the bacterial ribosomal protein bS21 family. (58 aa)
rpsPRibosomal protein S16; Similar to AA sequence:cyanobase_aa:Npun_F2858; Belongs to the bacterial ribosomal protein bS16 family. (86 aa)
rpsF30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (106 aa)
BAU07426.1Cold-shock DNA-binding domain protein; Similar to AA sequence:cyanobase_aa:Cyan7425_4848. (209 aa)
rpmB50S ribosomal protein L28; Ab initio prediction:Prodigal:2.6; similar to AA sequence:cyanobase_aa:Ava_0142; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)
rpsG30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rpsJRibosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (105 aa)
rpsB30S ribosomal protein S2; Similar to AA sequence:cyanobase_aa:Aazo_4883; Belongs to the universal ribosomal protein uS2 family. (264 aa)
rplJ50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (181 aa)
rplL50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (132 aa)
rpmE50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (79 aa)
rpsI30S ribosomal protein S9; Ab initio prediction:Prodigal:2.6; similar to AA sequence:cyanobase_aa:Ava_0719; Belongs to the universal ribosomal protein uS9 family. (138 aa)
rplM50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (151 aa)
rpsK30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (131 aa)
rplO50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (161 aa)
rpsE30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (174 aa)
rplR50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa)
rpsH30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (133 aa)
rplE50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (181 aa)
rplXRibosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (116 aa)
rplN50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rpsQ30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (82 aa)
rpmCRibosomal protein L29; Similar to AA sequence:cyanobase_aa:Npun_R4382; Belongs to the universal ribosomal protein uL29 family. (75 aa)
rpsC30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (250 aa)
rpsSRibosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (91 aa)
rplB50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (287 aa)
rplWRibosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (104 aa)
rplC50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (211 aa)
rpmHRibosomal protein L34; Similar to AA sequence:cyanobase_aa:Npun_R1588; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
hpfLight-repressed protein LrtA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (219 aa)
BAU05461.1RNA-binding S1 domain-containing protein; Similar to AA sequence:cyanobase_aa:Npun_F0856. (327 aa)
rpmF50S ribosomal protein L32; Similar to AA sequence:cyanobase_aa:Aazo_2360; Belongs to the bacterial ribosomal protein bL32 family. (58 aa)
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (134 aa)
rpsORibosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
BAU08850.130S ribosomal protein S1; Similar to AA sequence:cyanobase_aa:Ava_1505. (337 aa)
rpmI50S ribosomal protein L35; Similar to AA sequence:cyanobase_aa:Aazo_4310; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
rpsN30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (100 aa)
rpmG50S ribosomal protein L33; Ab initio prediction:Prodigal:2.6; similar to AA sequence:cyanobase_aa:Ava_1320; Belongs to the bacterial ribosomal protein bL33 family. (64 aa)
rpsR30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (71 aa)
rpsU30S ribosomal protein S21; Ab initio prediction:Prodigal:2.6; similar to AA sequence:cyanobase_aa:Tery_4602; Belongs to the bacterial ribosomal protein bS21 family. (65 aa)
rpsU-230S ribosomal protein S21; Similar to AA sequence:cyanobase_aa:Aazo_4662; Belongs to the bacterial ribosomal protein bS21 family. (64 aa)
Your Current Organism:
Fischerella sp. NIES3754
NCBI taxonomy Id: 1752063
Other names: F. sp. NIES-3754, Fischerella sp. NIES-3754
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